Pantoea sp. PSNIH2: PSNIH2_15810
Help
Entry
PSNIH2_15810 CDS
T03514
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
panp
Pantoea sp. PSNIH2
Pathway
panp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH2_15810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panp03019
]
PSNIH2_15810
03016 Transfer RNA biogenesis [BR:
panp03016
]
PSNIH2_15810
Enzymes [BR:
panp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSNIH2_15810
Messenger RNA biogenesis [BR:
panp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSNIH2_15810
Transfer RNA biogenesis [BR:
panp03016
]
Prokaryotic type
tRNA degradation factors
PSNIH2_15810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
S1_RRP5
UPF0181
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AIX75091
LinkDB
All DBs
Position
complement(3418323..3420452)
Genome browser
AA seq
709 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMASMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTSDEIKQSRLDLVVA
GTQGAVLMVESEADILTEEQMLGAVVFGHEQQQVVIENINALVAEAGKPRWDWQPEAVNE
ALNARIAALAESRLSDAYRITEKQERYAQVDLIKSETIAALLAEDESLDEGEISDILHAI
EKNVVRSRVLNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTAR
DAQSLDELMGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKIDE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGERYVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
ISTPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEASEQQPQAEAAAATPEAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgattgtacgtaaattccagtacggtcagcataccgtgacgcttgagacc
ggtatgatggcgcgtcaggctaccgcggccgttatggccagcatggacgatactgctgta
tttgtaaccgttgttggtcagaaaaaagcgaaacctggtcaggacttctttccgctgacc
gttaactatcaggagcgtacctacgctgctggccgtattccaggcagcttcttccgtcgt
gaaggccgcccaagcgaaggcgagaccctgatcgcgcgtctgattgaccgcccggttcgt
ccgctgttcccggaaggcttcgtgaacgaagtgcaggttattgcgaccgttgtgtccgtt
aacccgcaggttaacccggatatcgttgcgatgatcggcgcctctgccgcgctgagcctg
tccggtattccgttcaacggtccgatcggtgctgcgcgcgttggttatattaacgatcag
tatgtgctgaacccgacttctgacgagatcaaacagtctcgtctggacctggtcgtcgcg
ggtactcagggcgcggtgctgatggtggaatccgaagcggatatcctgaccgaagagcag
atgctgggcgcagtggtatttggccacgagcagcagcaggttgtgatcgaaaacatcaat
gcgctggtcgccgaagcgggcaaaccgcgttgggactggcagcctgaagccgttaacgaa
gcgctgaatgcgcgtatcgccgcgttggcggagtctcgcctgagcgacgcttaccgcatc
acagaaaaacaggagcgctatgctcaggttgatctgatcaaatctgaaactatcgctgcg
ctgctggcggaagatgagtcgctggacgaaggcgaaatcagcgatatcctgcacgctatc
gagaaaaacgtggtgcgtagccgcgttctgaacggcgagccgcgtatcgacggccgtgaa
aaagatatgatccgcggtctggatgttcgtaccggcgtactgccgcgtacgcatggctcc
gcgctgttcacccgtggcgaaacgcaggcgctggtcgccgcgacgctgggcaccgcgcgt
gacgcgcagagccttgacgagctgatgggggagcgtaccgacaacttcctgttccactat
aatttccctccgtactccgtaggcgaaaccggtatggtgggctcaccgaagcgtcgtgaa
attggtcacggccgtctggcgaagcgtggcgttctggccgttatgccgaaaatcgatgaa
ttcccgtacaccgtacgcgtggtgtctgaaatcaccgaatccaacggatcttcttctatg
gcttccgtttgcggcgcttctctggcgctgatggatgcgggcgtgccgatcaaagcggcc
gtagccggcatcgcgatgggtctggtgaaagagggcgaacgctatgtcgtgctttctgac
atcctgggcgatgaagatcacctcggcgatatggactttaaagttgccggtagccgcgac
ggtatcactgcgctgcagatggatatcaaaatcgaaggcatcacccgcgaaatcatgcag
gtggcgctgaaccaggctaaaggcgcgcgtctgcatatcctgggcgtaatggagcaggct
atcagcacgccgcgtggcgatatctctgagttcgcaccgcgtattcataccatcaagatc
aatccggacaagattaaggacgtgattggtaaaggcggttcggtcatccgtgcgttgact
gaagagaccggcaccacgatcgaaatcgaagatgacggcaccgtgaaaatcgcggcgacc
gacggcgacaaagcgaagcatgcgattcgtcgtatcgaagagatcaccgctgagatcgaa
gtaggccgcatctacaacggcaaagtaacccgtatcgtcgacttcggcgcctttgtggct
atcggcggcggtaaagaaggtctggtccacatttctcaaatcgctgacaagcgcgttgag
aaagtgaccgactacctgcagatgggtcaggaagtgccggttaaagtgctggaagtggac
cgtcagggccgcgtgcgtctcagcatcaaagaagcttcagaacagcagccgcaggcggaa
gcggcagccgctacccctgaagcagagtaa
DBGET
integrated database retrieval system
