Pantoea sp. PSNIH2: PSNIH2_16435
Help
Entry
PSNIH2_16435 CDS
T03514
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
panp
Pantoea sp. PSNIH2
Pathway
panp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH2_16435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panp03019
]
PSNIH2_16435
03400 DNA repair and recombination proteins [BR:
panp03400
]
PSNIH2_16435
Enzymes [BR:
panp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSNIH2_16435
Messenger RNA biogenesis [BR:
panp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSNIH2_16435
DNA repair and recombination proteins [BR:
panp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSNIH2_16435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AIX75199
LinkDB
All DBs
Position
complement(3548444..3550270)
Genome browser
AA seq
608 aa
AA seq
DB search
MSTAAVINQEALAEQVLRDTFGYQQFRPGQQTIIQASLSGRDCLVVMPTGGGKSLCYQIP
ALLRDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREEQQAVMAGCRSGEIRLLY
IAPERLMMDNFLDSLTHWKPAMLAVDEAHCISQWGHDFRPEYGALGQLRQRFPSLPVMAL
TATADETTRNDIVRLLQLHDPLIQISSFDRPNIRYMLVEKFKPTEQLLRYVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGMENAHRAQVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKAPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCGNCDICLDPPRRYDGMVEAQKAL
STIYRVGQRFGMGYVVEVLRGASNQRIRELGHDKLPVYGIGRDQSHEHWVSVLRQLIHLG
LVTQNITLHSALQLTEAARPVLRGEAPLMLAVPRLVTVKAKYNNQKSYGGNYDRKLFAKL
RKLRKAIADEENIPPYVVFNDATLIEMAEQMPLTASEMLSVNGVGHRKLERFGKPFLVMI
REHVDGEE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggcagtaattaatcaggaagcgctggctgaacaggtattacgcgatacc
ttcggctatcagcagtttcgccccgggcagcaaaccatcattcaggcgtcgctgagcggc
cgggattgtctggtggtgatgcccaccggcggcggaaaatcgctctgttatcaaattccg
gccctgctgcgtgatggcctgacgctggtcgtttcgccgctgatttcgctgatgaaagat
caggtcgatcagctgctggcgaacggcgtggcggcggcgtgcctgaattcgacgcaaacg
cgcgaagagcagcaggcggtgatggcgggatgtcgcagcggcgaaatacgtctgctctac
atcgcgccggaacgtctgatgatggataacttcctcgacagcctgacgcactggaagccg
gcgatgctggcggtggatgaggcgcactgtatttcccagtggggacatgatttccgcccg
gaatatggcgcgctgggccagctgcgccagcgtttcccgtcgctgccggtgatggcgctg
acggcaaccgccgatgaaaccacgcgcaatgatattgtccgcctgctgcagttgcacgac
ccgctgattcaaatcagtagcttcgaccggccgaacatccgctatatgctggtggaaaaa
ttcaagccgaccgaacagctgctgcgctacgtgcaggatcagcgcggtaaaagcggcatt
atttactgcaacagccgggcgaaagtggaagacacggcggcgcgtctgcaaagccgcggt
ttaagcgtaggcgcctaccatgccggcatggaaaacgcccatcgcgcgcaggtgcaggag
gcatttcagcgcgacgatttgcaaatcgtcgtggcaactgtcgctttcggcatgggcatt
aacaaacccaacgtgcgctttgtggtgcatttcgatattccgcgcaacattgaatcctat
tatcaggaaaccggacgcgccggacgagacggtctgcctgctgaagccatgctgctttac
gatccggcggatatggcctggctacgccggtgtctggaagagaaagcgcccggtccgctg
caggatattgagcgtcataaactgaatgcgatgggcgcgtttgccgaagcgcaaacatgc
cgccgtctggtcctgcttaactatttcggcgagggacgccagcagccgtgcggcaactgc
gatatctgcctcgatccgccgcgtcgctacgatggcatggtggaggcgcagaaagcgctg
tcgaccatctatcgcgtcggccagcgttttggcatgggctatgtggttgaggttctgcgc
ggcgccagcaaccagcgtattcgcgagctgggccacgataagctgccggtctatggcatt
ggccgcgatcagagccatgaacactgggtcagcgtgctgcgccaacttattcatcttggg
ctggtgacgcaaaacattacgttgcattccgcgctgcagctcaccgaagcggccaggccg
gttttacgcggcgaggcgccgctgatgcttgccgtaccgcggctggtgacggtaaaagcg
aaatataacaaccagaaaagttacggcggcaactacgaccgcaagctgttcgccaagcta
cgcaagctgcgcaaagcgatcgccgacgaagagaacatcccgccttacgtggtgtttaac
gatgcgacgttgattgagatggcggagcagatgccgttgacggcgtcggaaatgctcagc
gttaacggcgttggccatcgcaagctggagcgttttggcaagcctttcctggtgatgatc
cgcgagcatgtcgacggcgaggaataa
DBGET
integrated database retrieval system
