Pantoea sp. PSNIH2: PSNIH2_18350
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Entry
PSNIH2_18350 CDS
T03514
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
panp
Pantoea sp. PSNIH2
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
panp03016
]
PSNIH2_18350
Enzymes [BR:
panp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PSNIH2_18350
Transfer RNA biogenesis [BR:
panp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PSNIH2_18350
Prokaryotic type
tRNA splicing ligases
PSNIH2_18350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
DUF7919
Motif
Other DBs
NCBI-ProteinID:
AIX75520
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All DBs
Position
complement(3979409..3980632)
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AA seq
407 aa
AA seq
DB search
MKSQYQTLTVANGALVKMWTQGVPVEPEARQQLLDTAKMPFIFKHLAVMPDVHLGKGSTI
GSVIPTRGAIIPAAVGVDIGCGMMAVRTSLVAGDLPENLYGIRSAIERAVPHGRTSNRSG
NDKGAWKRAPESVDRHWSTLQTGFKRITDKYPALLKTNNYAHLGTLGTGNHFIELCLDEA
DRVWVMLHSGSRGVGNAIGTLFINRAQQDMRQHIANLPDRNLAYFEEGSRHFADYMNAVG
WAQDYARHNREIMMQHVLAALKQSISKPFSATAEAVNCHHNYVQREQHFGESVLVTRKGA
VSAQRGQLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRAMSRSAAKKRFTVADQQRAT
AHVECRKDSDVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgcaatatcaaacgttgaccgtcgccaacggcgcgctggtgaaaatgtggacc
cagggcgtgcccgtggaaccggaagcgcgccagcagctgctggatacggcaaagatgccg
tttatctttaaacacctggcggtgatgcctgacgtgcatctggggaaaggatcgaccatt
ggcagcgtgatcccgacgcgcggcgcgattattccggcggcggtcggcgtggatatcggc
tgcggcatgatggcggtgcgcacctcgctggtcgccggcgatctgccggaaaacctttac
ggcatccgcagcgcgatcgaacgcgcggtgccgcacgggcgcaccagcaaccgctccggc
aacgataaaggcgcctggaaacgcgcgccggagagcgtcgatcggcactggtcaacgttg
cagacaggattcaaacgcattaccgataaatacccggcgctgctgaaaaccaataactac
gcgcacctcggcacgctcggcaccggcaaccattttatcgagctgtgtctggatgaagcg
gaccgcgtctgggtgatgctgcatagcggatcgcgcggcgtcggcaacgctatcggcacg
ttgtttatcaatcgggcgcagcaggatatgcggcagcatatcgccaacctgccggaccgc
aacctggcctactttgaagagggcagccgccacttcgccgactatatgaatgcggtgggc
tgggcgcaggattacgcgcgtcataatcgcgaaatcatgatgcagcatgtgctggcggcg
ctgaagcagagcatcagcaagccgttcagcgccacggcggaggcggtgaattgccatcac
aactatgtgcaacgcgagcagcatttcggcgaatcggtgctggtgacgcgcaagggcgcg
gtatcggcgcagcgcggtcagctgggcatcattcccggctcgatgggcgcgaaaagcttt
atcgtgcgcggcctgggaaatgaagagagtttctgctcgtgcagccacggcgccggacgc
gccatgagccgctccgcggcgaaaaaacgcttcaccgtggccgatcagcagcgggcgacg
gcgcacgtggaatgccgcaaagacagcgacgtgattgatgaaatcccgatggcttataaa
gatatcgacgcagttatggcggcgcagtcatcgctggtggagatcgtgcatactctgcgc
caggtggtttgcgtaaaaggataa
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