KEGG   Pseudomonas antarctica: A7J50_1048
Entry
A7J50_1048        CDS       T04830                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
panr  Pseudomonas antarctica
Pathway
panr02020  Two-component system
Brite
KEGG Orthology (KO) [BR:panr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    A7J50_1048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:panr03021]
    A7J50_1048
Transcription machinery [BR:panr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A7J50_1048
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF HTH_23 HTH_20 HTH_24 GerE HTH_28 Xre-like-HTH Trp_repressor TnsD HTH_10 HTH_11 HTH_5 HTH_38
Other DBs
NCBI-ProteinID: ANF84489
LinkDB
Position
complement(1220322..1220912)
AA seq 196 aa
MIHLLWRIAEPCHAPYNANNSCSLEHANACGVIALQPSNTVEVLYNDHHHWLTGWLRRKL
GCPESAADLAQDTFIRVLTARETPTLIEPRAFLTTVAKRVLFNFYRRQDLERAYLEALAQ
SPEHVAPSEEERAIILQTLLELDQLLDGLPTLVKRAFLLAQLDGLTYAQIGAELGISIAT
VKRHLNKAAMRCYFAL
NT seq 591 nt   +upstreamnt  +downstreamnt
atgattcatctgctctggcggattgccgaaccttgtcacgccccctacaatgcgaacaat
tcttgttctctagagcatgccaatgcttgtggagtgattgcgttgcagccgtccaatacc
gtcgaagttttgtacaacgaccatcaccactggctcaccggctggttgcgacgcaagctc
ggctgcccggaaagcgcggccgacctggcgcaggacacgttcatccgcgtgctcaccgca
cgggaaaccccaacgctgatcgaaccccgcgccttcctcaccaccgtcgccaagcgcgta
ttgttcaacttctaccgccgccaggacctggaacgcgcctacctcgaggcactggcgcag
agccctgaacacgtggcgccctctgaagaagaacgcgccatcatcctgcaaaccctgctg
gagctggaccaactgctcgacggcctgcccaccctggtcaaacgtgcattcctgctggcc
cagcttgacggtctgacctacgcacaaatcggcgccgagctgggcatttccatcgccacg
gtcaaacgccacctgaataaagcggcgatgcgctgctacttcgccctgtga

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