Pseudomonas antarctica: A7J50_1690
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Entry
A7J50_1690 CDS
T04830
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
panr
Pseudomonas antarctica
Pathway
panr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7J50_1690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
panr03400
]
A7J50_1690
Enzymes [BR:
panr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7J50_1690
DNA repair and recombination proteins [BR:
panr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A7J50_1690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
ANF85113
UniProt:
A0A172YXV7
LinkDB
All DBs
Position
complement(1835601..1839050)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPDNQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRS
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGTLPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVSVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKNLRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagcgccgagcggctggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcattttcccgactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctttaccgcttgccggaa
ctggcccacggcgtgctggtggtgccgatcaccacggccctgcatcgcctggcaccgacc
aagttcctgctgggcagcagcctggtgctggatgtcggccagaagctcgacgtggaacag
atgcgcacgcgcctcgaggccagcggctaccgctgcgtcgacacggtgtacgaacacggc
gagtttgccgtgcgcggggcgttgatcgacctgttcccgatgggcagcaaattgccgtac
cgcatcgacctgttcgatgacgaaatcgaaacgctgcgcaccttcgacccggacaaccaa
cgctccattgataaagtggactcgatcaagctgctgccggcgcgggaattcccgctgcaa
aaagacgcggtcacgcgcttcaaggcacgctttcgtgaacgcttcgacgtggacttccgc
cgctgcccgatcttccaggacttgagcagcgggattacaccggccggtatcgagtactac
ctgccgctgttctttgacgaaacctccaccctgttcgattacctgccccaggacacccaa
gtgttctcgctgccgggcatcgagcaggcagcggaaaacttctggaacgacgtgcgcagt
cgctatgaagagcgccgcgtcgatccgtcgcgtcctttattgccgcccgccgagctgttc
ctgccggtggaagactgcttcgcccgcctgaaaaactggccgcgcgtggttgccagccaa
caggacgtggacgccggcagcggccgcgagcgcttcccggcgggcacactgccggatctg
gcgatccaggccaaagccacgcaaccgctggaggcgctgtccaacttcctcggtgatttc
cccggccgcgtgctgtttaccgccgaatccgccggccgtcgcgaagtgctgctggaattg
ctcgaacgcctgaagctgcgcccgaaaaccgtcgacagctggccggatttcgtcgcgagc
aaagagcgcctggcgatcaccatcgcgccgctggatgaaggtttgttgctggacgacccg
gccctggcgctgatcgccgaaagcccgctgttcggccaacgcgtgatgcagcgccgtcgc
cgtgaaaaacgcgcggacgccaacaacgacgcggtcatcaaaaacctgaccgagctgcgc
gaaggcgcgccggtggtgcatatcgaccacggcgtgggccgctacctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgaaggcgccaag
ctctatgtgccggtagccagcctgcacttgatcgcccgctacaccggcagcgacgatgcc
ctggcgccgttgcaccgcctgggctccgagacctggcagaaagccaagcgcaaagccgcc
gaacaagtgcgcgatgtggctgccgaattgctcgacatctatgcacgccgtgcggcgcgc
gaaggttacgccttcgccgacccgaaggccgactacgccaccttcagcgccggcttcgcc
ttcgaagaaaccccggaccagcaaaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagccgatggaccgtctggtgtgtggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgccgcctttattgcggtgcacggcggcaagcaggtggcgattctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgattggccggtg
agcgtcgaagtgatgagccgcttcaagtccgccaaggaagtgaatgccgccgtcgccgat
ttagctgaaggcaagatcgacatcgtgatcggcacgcacaagctgctgtctgacgacgtg
aagatcaaaaacctgggcctggtgatcatcgacgaagagcaccgctttggtgtgcgtcag
aaagaacaactgaagaacctgcgcagcgaagtcgacatcctcaccctcaccgccacgccg
attccgcgcacgctgaatatggccgtgtcgggcatgcgcgacctgtcgatcattgccacg
ccgcccgcccgtcgcttgtcggtgcgcacgttcgtgatggagcagaacaaaagcacggtc
aaggaagcgctgctgcgggaattgctgcgcggcgggcaggtgtactacctgcacaacgac
gtgaagaccatcgagaagtgcgccgccgacctcgccgagctggtgccggaagcacgcatc
gccatcggccacgggcagatgcgcgaacgcgacctcgaacaggtgatgagcgatttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcgcagctgcatcaa
ctgcgtggccgcgtcgggcgtagccaccaccaagcgtatgcctatttgctgacgccaccg
cgccagcaaattaccggcgatgccgaaaagcgtttggaagccatcgccaacacccaggac
ctcggtgccgggtttgtactggccaccaacgacctggaaatccgtggcgcaggcgaactg
ttgggcgacggccagagcgggcagatccaggccgtgggcttcaccctttatatggagatg
ctcgagcgcgcggtgaaagccatccgtaaaggcgagcaaccgaacctcgatcaacccttg
ggcggcggcccggaaatcaacctgcgcttgcccgcgttgattccggaagactacctcccg
gacgtacacgcgcggctgatcctgtacaagcgcatcgcttcggccaccgacgaagacggt
ctcaaggacctgcaagtagagatgatcgaccgcttcggcctgttgcccgagccgaccaag
aacctggtgcgcctgaccctgctcaaattgcaggccgagcagcttggcatcaagaaggtc
gatgccgggccgcaaggcgggcgtatcgagttcgaagcgcaaacgccggtggacccgctg
gtgttgatcaagctgattcagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgcgccgaagaacgctttaatacattagaggcgctg
tttgagcgcctcatcccgaaatctgcttga
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integrated database retrieval system
