Pseudomonas antarctica: A7J50_1876
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Entry
A7J50_1876 CDS
T04830
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
panr
Pseudomonas antarctica
Pathway
panr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7J50_1876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panr03019
]
A7J50_1876
03009 Ribosome biogenesis [BR:
panr03009
]
A7J50_1876
Enzymes [BR:
panr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7J50_1876
Messenger RNA biogenesis [BR:
panr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7J50_1876
Ribosome biogenesis [BR:
panr03009
]
Prokaryotic type
rRNA helicases
A7J50_1876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
ANF85297
UniProt:
A0A172YYI6
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All DBs
Position
2017747..2019420
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGQDMIGQAQTGTGKTAAF
ALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGELLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaacccgaacattcttgctgcc
gtcatcgcgactggctacgaagaaccttcggctattcagcagcaatcgatcccgatcatc
atggccggccaggacatgattggccaggcgcaaaccggtaccggtaaaaccgccgcgttc
gccctgcctattctgcattgcatcgatcctgccaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccaggcgtaaccgttgtggccgtttacggcggcgcgcctatgggcccacaactgaaa
gcaatccgtaacggcgcacagatcgttgtcgccaccccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctgtcgaccgtgaaccacctggttctggacgaagctgacgaa
atgttgaagctgggcttcatggatgacctggaagtcatcttcaaggcactgccaccgacc
cgtcagaccgtactgttctcggcgaccctgccacagtcgatccgtgccattgccgaacgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagttgaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccaacgtgagcgcgtgattgactccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgcccgtggcctcgacgttccacgtatcacccacgtgttcaacgtt
gacatgccgtacgacccagagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgtgagcgccgcatgctgcaagtgatc
gagcgcgttaccggtcagaaagttgccgaagtccgcctgccggatgcccaggctgttctc
gatgcgcgcatcaagaaactgaccaacagcttgtcgccgctggtggctgatgctgaatcg
acccacggcgaactgctggaccgcctgactgccgatatcggttgcaccccacgtgccctg
gctgcagctctgctgcgcaaagcaaccaacggtcaggccctgaccctggcagccatcgag
aaagaacgcccactggttccgaacaacgcgccacgcggtgatcgtccagagcgtaccggt
gatcgtccagaccgtggtgatcgtgagcgtcgcgctccggttccattggctgaaggccgt
gctcgctgccgtaccgcgctgggcgcgcgtgatggcatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggcacgtgaagcgatcggtcgcattcaggtccgtgac
agcttctccctggtggaactgccggaagacggcctggaaaaactgctggccaagctgaaa
gacactcgcgttgccggtaagcagctgaagctgcgtcgctaccgcgaagattga
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