Pseudomonas antarctica: A7J50_4222
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Entry
A7J50_4222 CDS
T04830
Name
(GenBank) RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
panr
Pseudomonas antarctica
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panr03019
]
A7J50_4222
Enzymes [BR:
panr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A7J50_4222
Messenger RNA biogenesis [BR:
panr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A7J50_4222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ANF87580
UniProt:
A0A172Z510
LinkDB
All DBs
Position
complement(4655048..4658959)
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AA seq
1303 aa
AA seq
DB search
MTDQAPAIDQLLKNLDHAMLADRHRLRRQLLELRKKPDEEKLAQWVTRMQASCAQVTARR
ASLPVIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQYGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYS
EEDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLTVNKEPADFAKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWIHPSSG
IGKKRPQWLMTAELVETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSRELFIREGLVRGEIQSRAKCLTANQQLLEQLDEL
EAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLARE
ASEVTAAHYPDTLHLGDLALALSYHFEPNHPRDGVTLRVPAPLLPALPPERLDWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRIEFGQGSLPQALGRELLRMTGARVSDEA
WAEAAQQVENHLKMNLEVVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAAVAEKTQQKIAGLSMTVYPALVEENATVKEGRFSTAAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDTCVLDGEASLPRDGAGLAAL
AERKRGSWTEHAERLARLTLEVLKLWHGLQKRFKGKIDLAQAVALNDIKQQLSNLVYPGF
VRETPAQWFKELPRFLKAIELRLEKLPSQVQKDRVWSSELGGLWAQYQSRLNKHAQEGKR
DPQLALYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSLVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcgcccgctatcgaccaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccgcttgcggcgccagttgctcgagctgcgcaagaaacccgatgaggag
aagctggcgcaatgggttacgcgcatgcaggcgtcctgcgcccaggtgacggcgcggcgt
gccagcctgccggtgattcgttatgacgacagcctgccgattgccgccaagcgcgacgag
atcaaagaggcactcctcaagcatcaggtgctcattattgcgggcgaaaccggctcgggt
aagaccacccagttgccgaagatctgcctggaaatcggtcggggccagtacggtttaatc
ggccatacccagccgcgccgaattgcggcgcgcagcgtcgccagccgtgtcgctgaagaa
ctggcgacgccgctgggcgcgctggttggctatcaggtgcgcttcgaagaccagagtgac
tccaacaccctgatcaagctgatgaccgacggtattttgctggccgaaacccagaacgac
cgctacctggaacgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctgaac
atcgacttcctgctcggctacctgaaaaccctgctgccgcgtcgtccggacctcaaagtc
atcatcacctcggcgaccatcgacctggagcgcttttccaagcacttcgacgatgcgccg
attgtcgaagtctcgggccgcactttcccggtggacacctggtatcgcccgctgaccctg
gagcaggacgaggagggcaaccgtgtcgaggacgatttgaccgttgaccaggcaatcctc
gccacccttgatgaaattgccgcctatgagcgcagcgaacggcgcagccccggtgatgtg
ttggtgtttttgccgggtgagcgcgagattcgcgacgccgccgacatgctgcgcaaggcc
cagctcaaacacaccgaaattctgccgctgtatgcgcggctgtcaccggccgaacagcag
cgtattttccagtcccacccgggtcggcgtgtagtgctggcgaccaacgtggcggaaacc
tcgctgaccgtgccgggcattcgttatgtgatcgacagcggcaccgcgcgtatcagtcgc
tacagctatcgcgccaaagtgcagcgcctgccgatcgaagcgatttcccaggccagcgcc
aaccagcgtaaaggccggtgtggccgtgtagagccgggcatctgcatccgcttgtacagc
gaagaggattttattgggcgcccggaatttaccgacccggaaattttgcgtaccaacctt
gctgccgtcatcctgcagatgctgcacctgcgcctcggcgaaatcaccgacttcccgttt
atcgagccgccggatggcaaggccatcagcgacggtttcaacctgctgcaagaactctcg
gcggtagaccgtaacagccaactgacgccgctgggtcgccaattggcgcgtctgccggtg
gacccgcgtatggggcgcatgttgctcgaagctgccaagctcggcagcttgcaggaggtg
ttgattgtcgccagtgcgatgtcgatccaggacccgcgcgagcgcccgcccgagcgtcag
caagctgccgatcaggcccacgcacagtggaaggatgtggattccgacttcgccggtttg
gttaacctgtggcgtggttttgaagaacagcgccaggcactcaccgccagcccgttgcgt
aactggtgccgcaagaacttcctgaattacctgcggctgcgcgagtggcgcgattctcat
cgccagctcagcctgatttgccgcgatatgcagctgaccgttaacaaagagccggcggac
tttgcgaaactgcacaaagccgtgctgtccggtctgttgagccaaattggccagaagacc
gaagacggcgattacctcggcgcgcgtcagcggcgcttctggattcacccgtcctcgggc
atcggcaaaaaacgcccgcaatggctgatgaccgctgaactggtggaaaccaccaagctg
tatgcgcgcatggtggcgaaaattgatgcggactggatcgagcccctggccgggcacctg
atcaagaaaaaccacttcgaaccgcactgggagaagaagcgcggccaggtcgtggcgttt
gagcagatcaccctgttcgggttgattgtggtcgggcggcggccggtgcattacgggccg
attgacccggtggtgtcgcgcgagctgtttatccgcgaaggtctggtgcggggcgagatt
caatcccgggccaagtgcctgacggcgaaccagcaactgctggagcagcttgatgaactg
gaggccaaggcgcggcgtcgcgacattctggcggacgaagaaaccctctacgccttctac
gacgcgcggctgccggcggagatccaccagacggccaccttcgacagctggtacaaggtc
aacagtcagaaagacccgcaattgctgatcatgcgcgaggaagacgtgctggcccgcgag
gccagtgaagtcaccgccgcgcattacccggacacccttcacctgggcgacttggccctg
gccctgagctatcactttgaacccaaccacccgcgcgacggtgtgaccctgcgcgtgccg
gcgccgctgctgccggcgctgccgccggagcgcctggactggctggtgccgggggtgatc
gaagccaagtgcatcgcgctggtgcgcaacttgcccaaggcgctgcgcaaaaactttgtg
ccagtgccggatttcgtcaaggcggcgctgcaacgtatcgaatttggccagggttcactg
ccccaggcgctcgggcgcgaattgctgcgcatgacgggcgcacgggtcagcgatgaagcc
tgggccgaagcggcgcagcaggtggaaaaccacctgaagatgaacctggaagtggtcgat
ggccagggcaagttcctcggcgaaggccgcgacttggccgagctgactgcacgctttgcc
gaggccagccaggctgccttggccgtgccgcaaaccgcgaaaagccagcagccggtggaa
gccaaggtgttcgcggcggtggcggagaagacccagcaaaagatcgccggcctgtcgatg
acggtctacccggcgctggtcgaagagaacgctacggtcaaggaagggcgcttttcgacg
gccgccgaagccgagttccagcaccgccgcgccttgcaacgcctgctgatgcaacaactg
gcggaaccggccaagttcctgcgtggcaaattgcccgggctgaccgagttgggcctgatg
taccgcgaattggggcgcattgacgcgttggtggaagacattttgctggccagcctcgac
acctgcgtactggacggcgaagccagcctgccgcgagacggcgcgggcctggccgccctg
gccgagcgcaagcgtggcagctggaccgaacacgccgagcgcctggcccgcttgaccctg
gaggtgctgaaactgtggcacggcttgcagaagcgtttcaaaggcaagatcgacctggcc
caggctgtggcgttgaacgatatcaagcaacagctcagcaacctggtttatcccggtttt
gtccgggaaacgccggcgcagtggttcaaggagttaccgcgtttcctcaaggccatcgag
ctgcgcctggagaagttgccaagccaggtgcaaaaagatcgcgtttggagctctgagctg
ggcggcctgtgggcgcagtaccagagccggctgaacaaacacgcccaggaaggcaagcgc
gacccccagctggcactctatcgctggtggttggaggaatatcgggtgtcgttgtttgcc
cagcagttgggcaccaaagtgccgatttccgacaagcgtttgagcaagcaatggagcctg
gtggaggcttga
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