Pseudomonas antarctica: A7J50_4479
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Entry
A7J50_4479 CDS
T04830
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
panr
Pseudomonas antarctica
Pathway
panr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7J50_4479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panr03019
]
A7J50_4479
03009 Ribosome biogenesis [BR:
panr03009
]
A7J50_4479
Enzymes [BR:
panr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A7J50_4479
Messenger RNA biogenesis [BR:
panr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A7J50_4479
Ribosome biogenesis [BR:
panr03009
]
Prokaryotic type
rRNA processing factors
A7J50_4479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
ANF87832
UniProt:
A0A172Z663
LinkDB
All DBs
Position
4927765..4930947
Genome browser
AA seq
1060 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPVAAPAAMPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPAAERPARNEERRNGRQ
QSRNRNGRRDEERKPREERAPREERAPREERAPREAREETPTVAREERAPREERAPRTPR
APREDRKPRGEREERVRELREPLDAAPAVAAEAASEERPARQPREERAPREERQPRPPRE
ERQPRAEQAAAASEEDEEVLTGEEQLQEDGQDNAEGDRPRRRSRGQRRRSNRRERQRDAN
GNVIEGSEETGEHTEAATAEPTGAELAAGLAVTAAVASTVISAPAEAQAYEQAERATAAV
EETAAVEAPVAEAPAVETPVVEAITPIEAPAVPEVEVAPVREAQPEVEVAAVEPAPVVEA
QPVVEAAVEAPVVEEAAPAVREVREEQTAFQWTAEPAAPVEAPTPAPVAEEAPAPVADVV
EAAPVVVPAPVVEAPVVEPVVAEVAAPVVEAAPASALTDNGRAPNDPREVRRRRKEAEAA
AAAAAAAPAAAEVVEAPAPVVEAVVEHKALEEEHEPKPFV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcaaaagaaggccaac
atctataaaggccgtattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtgaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccacgttcatcagcctg
gctggccgttacctggtcctgatgccgaacaacccacgtgccggcggcatttcccgtcgc
atcgaaggcgaagagcgcaacgagttgcgtgaagcgctgaacggcctggttgcaccggcc
gacatgggcttgatcgttcgcactgccggccttggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgctatcaaagaagcgtccctggatcgttcc
gcgccattcctgatctatcaggaaagcaacgtgatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
tttatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgttttcagatcgaaagccagatcgagaccgccttccagcgcgtcgtc
gaactgccttccggcggctccattgttatcgacccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgctaccaaaggtagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcggctgaagaaatcgcccgccagctgcgcctgcgtgatatcggcggcctgatc
gtgatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagctgaccgcgcccgcgtacaagttggccgtatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccatccctgggtgaaagcagcggcatcgtc
tgcccgcgttgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcacaagtg
ccgatcccggttgcagccttcctgctcaacgaaaaacgcaactcgatcaccaagattgaa
ctgcgcacccgtgcccgtatcgtcatcctgccgaacgatcacctcgaaacgccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagctcacagcggccagtccagctacgaa
atcgctgctgccgctgcggaagttgaagaagtccagccggccgccgcaacccgcacactg
gttcgccaggaagctgccgtgaagactgcaccagcgcgcgccaatgcaccggttccgacc
gaagtggctgcaccggttgccgcccctgccgccatgcctgagccaagcctgttcaaaggc
ctggtgaagtcgctggtgagcctgttcgccaccaaagaagagcctgtggctccggttgtg
gttgaaaaaccagccgccgagcgtccggcccgtaacgaagaacgtcgcaacggtcgccag
caaagccgtaaccgcaacggtcgccgtgacgaagagcgcaagcctcgcgaagaacgtgca
ccgcgtgaagaacgcgcgccacgtgaagagcgtgcacctcgcgaagcccgtgaagaaacc
ccaaccgtagcccgtgaagaacgtgcaccgcgtgaagagcgcgcaccacgtactccgcgc
gcaccgcgtgaagatcgcaagccacgtggcgagcgcgaagaacgtgtgcgtgaactgcgc
gagccgctggacgccgctccggccgttgctgccgaagctgccagcgaagaacgtccggct
cgccagccgcgtgaagaacgcgccccacgtgaagagcgccagccgcgcccaccgcgtgaa
gagcgtcaaccacgcgccgagcaagccgctgccgccagcgaagaagatgaagaagtgctg
accggcgaagagcagttgcaggaagatggccaggacaacgccgaaggcgatcgtccacgc
cgccgctcccgtggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgtgatgccaat
ggcaatgtgatcgaaggctcggaagagaccggcgagcacactgaagccgcaaccgcagaa
ccgaccggcgccgaactggctgccggcctggctgtgacggctgccgttgccagcaccgtc
atcagcgcaccggctgaagcccaggcctacgagcaagctgaacgcgctactgctgccgtc
gaagagacagcagctgtagaagcgccagtcgctgaagccccggcagttgaaacccctgtc
gtcgaagcaatcaccccgatcgaagccccagcggttccggaagtggaagttgcgccggtt
cgcgaagcccaaccagaagtggaagtggctgctgttgagcctgcaccggtggttgaagct
cagccagtggttgaagccgccgttgaagcaccggttgtcgaagaagcagccccggcagtg
cgtgaagttcgcgaagaacagaccgcgttccagtggactgccgagccagccgcaccggtt
gaagcgccaacccctgccccagtggcagaagaggcaccggccccggttgccgacgtggtt
gaagctgccccggtcgtggtgcctgcgccagtggttgaagcgccagtggttgaaccagtg
gttgccgaggtcgccgctccggtggttgaagccgctcctgccagcgccctgaccgataac
ggccgcgcgccgaacgacccacgtgaagtgcgtcgtcgtcgcaaggaagctgaagcagcc
gctgctgcagccgctgccgcaccggctgctgccgaagtggtcgaggcgccagccccggtc
gttgaagctgtggttgagcacaaggccttggaagaagagcacgaacctaaacccttcgtc
tga
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