Pseudomonas antarctica: A7J50_5104
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Entry
A7J50_5104 CDS
T04830
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
panr
Pseudomonas antarctica
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panr03019
]
A7J50_5104
Enzymes [BR:
panr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A7J50_5104
Messenger RNA biogenesis [BR:
panr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A7J50_5104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
HA2_N
AAA_22
AAA_30
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ANF88444
UniProt:
A0A172Z7G6
LinkDB
All DBs
Position
complement(5620285..5622792)
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AA seq
835 aa
AA seq
DB search
MNSLPIDDVLPALRDALANRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQTILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPTTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRDLFRDEQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVQMRWGRPYQPGEFIEPRVVQTILEALHDQTGSVLVFLPGQAEIRRVNQQLADAL
GDRSDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAEILA
ADLAGLALQLARWGVTPTQLVWLDVPPTAAYAQAQDLLVRLGALNDDKLTAHGQKMAELP
AHPRIAHLLLRGQDLALASTACDVAALLGERDILRGGGADLHSRLALMSGEERARGTQGG
VQRAKQLARQYRGYLRGPAIQAVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLANG
RAALFAEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPALFDTVLAEQVRNVDQLDW
DEREGVLRAERQRKVGELVLSREPLTGQDESARSQALVNLVRRKGLELLPWTPELRQWQA
RVMLLRHLDAGKTSEWPDISDKALLASLEHWLMPYLGKVSRLSHFANLDISSFLHNLLPW
PLPQRLDELAPQHVKVPSGSSVRLDYSEQPPILAVRLQELFGLADTPRIAGGRQVVKLHL
LSPARRPVQVTQDLANFWRSTYVEVKKDLKGRYPKHYWPDDPLVAEPTARIKPRK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgttgccgatcgatgatgttttacccgccttgcgtgacgccttggcgaatcgc
catgaagccgtgctggaagcgccgcccggcgccggtaaaaccacccgcgtacccttggcg
ctattgaacgagccttggctggcggggcaaaccatcctgatgctcgaacctcgccgtctc
gccgcgcgcgcggccgccgagcgcctggccagtgagttgggtgaaaaggtcggcgaaacc
gtcggctatcgtatccgcctcgacagcaaggtcggccccacgacgcgcatcgaagtggtc
accgaaggcatcctcacccgccgcctgcaggacgacccggcgctggagggcgtgggcctg
ctgatcttcgacgaattccatgaacgcagcctcgacgccgacctggcgctggccctgagc
ctgaacggccgcgacctgtttcgcgatgagcagccactgaaaatcctgctgatgtccgcc
accctcgaaggcgagcgcctggccgggctgctggatgacgcgccgatcctgcgcagtgaa
gggcgcatgttcccggtgcagatgcgctgggggcggccgtaccagcccggtgaattcatc
gaaccgcgtgtggtgcagaccatcctcgaagccctgcatgaccaaaccggcagcgtgctg
gtgtttttgccggggcaggcggagattcgccgggttaaccagcaactggccgacgctttg
ggggatcgcagtgatgtgctgctgtgcccgctgcatggcgagctcgaccttaatgcccag
cgcgccgccatcgacccggcgccggcgggtaaacgcaaggttgtgctggccaccaacatc
gccgagaccagcctgaccatcaacggtgtgcgcgtagtgatcgacgccgggctggcgcgg
gtgccgcggttcgacccgggcagcggcatgacccgcctcgacacccaacgcatctcccgt
gccagtgctactcagcgcgccggccgggcagggcggttggagccgggcgtgtgttatcgc
ctgtggtccgaggaccagcacgaaggtctggctgcgtacggcagcgcggaaatcctcgcc
gccgacctcgcaggcctggccttgcagttggcgcgctggggcgtcacgcccacgcagttg
gtgtggctggatgtgccgccgactgccgcgtatgcccaggcccaggatctgctggtgcgc
cttggcgccttgaatgacgacaaactgaccgcccatggccagaaaatggccgagttgccg
gcccatccgcgtatcgcccatctgctgctgcgcgggcaggacctggcgctggcgtcgaca
gcgtgtgatgtggccgcgctgttaggtgagcgcgatatcttgcgcggtggcggtgctgac
ttgcacagccgcctggccttgatgtccggtgaagaacgcgcgcgcggcacccaaggtggc
gtgcagcgggccaagcaactggcgcggcaataccgtggctatttacgcggcccggcgatt
caagccgtggccgaccccgaccacccgcgctggctcggtgccttgctggcgctggcctac
ccggaccgtgtcgcccagcaacgtcgccccggtggcgccgagtaccgcctggccaacggc
cgcgccgcgctgttcgccgaagccgacagcctgatgaaacaaccctggttggttatcgcc
gacctcggcagccggcagggccagcgtgaagaacgcatctacctcgcggcggacttcgat
ccggcgctgttcgacacggtgctcgccgagcaagtgcgcaacgtcgaccagttggattgg
gatgaacgcgaaggcgtcttgcgtgctgaacgccagcgcaaagtcggcgaactggtgctg
agccgtgaaccattgaccgggcaggacgagtccgcccgcagccaggcactggtcaacctt
gtgcgccgcaaaggcctggagctgctgccgtggacgcctgaactgcgccaatggcaggcc
cgcgtcatgctgctgcgccacttggacgccggtaaaaccagcgaatggcccgacatcagt
gacaaggcgttgcttgccagcctggagcactggctgatgccgtatctgggcaaagtctcg
cgcctgagccatttcgccaacctggatatttccagtttcctgcacaacctgctgccctgg
ccgctgccccaacgcctggacgagctggcgccgcagcatgtgaaagtgccgtcgggctct
tcggtgcgtttggactacagcgaacaaccaccgattctggcggtgcgcttgcaggaattg
ttcggcctggcggacacaccgcgcatcgccggtgggcgccaggtggtcaagctgcacctg
ctgtccccggcgcgacggccagtgcaggtgacgcaggacctggcgaacttctggcgcagc
acgtatgtcgaggtgaagaaggacttgaaggggcgttatccgaagcattactggccggat
gacccgttggtggccgaaccaaccgcccggatcaaaccccgcaagtag
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