Pseudomonas antarctica: A7J50_5256
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Entry
A7J50_5256 CDS
T04830
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
panr
Pseudomonas antarctica
Pathway
panr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
panr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A7J50_5256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panr03021
]
A7J50_5256
03400 DNA repair and recombination proteins [BR:
panr03400
]
A7J50_5256
Enzymes [BR:
panr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A7J50_5256
Transcription machinery [BR:
panr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A7J50_5256
DNA repair and recombination proteins [BR:
panr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A7J50_5256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
ANF88592
UniProt:
A0A172Z881
LinkDB
All DBs
Position
complement(5771321..5775520)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVSGTRIVDTTVGRALLYQVVPKGLSYDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAQIINAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLGADDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagttgcgctggctaaagttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccatcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgattttgatgcccgcatg
ggtgccgaagctgtccgcgaactgctgcacgctatcgacctggaacacgagattggccgt
ctgcgtgaagaaattccgcaaaccaactccgaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaggccttccaaggttccggcaacttgccagagtggatggtgctgacc
gttctgccggttctgccgccagacctgcgtccgctggtaccgttggatggcggtcgcttc
gcgacttccgacctcaacgacctgtaccgtcgcgtgatcaaccgtaacaaccgcttgaag
cgtctgctcgatctgtccgcaccggacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gaagctgtcgatgctctgctcgacaacggtcgtcgtggccgcgctatcactggttcgaac
aagcgtcctctgaaatccttggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactcaggtcgttcggtaattaccgtaggcccgacc
ttgcgtctgcaccagtgcggtctgcctaagaagatggctcttgagctgttcaagccgttc
atcttcggtaagctggaaatgcgcggtctcgcgactaccatcaaagcggccaagaaaatg
gtcgagcgcgaactgcctgaggtttgggacgttctcgctgaagtaattcgcgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgcgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacgcgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgctgacctgcaagaagttgaccgtgtgttccgtgccggc
gaagccgcactgcatgccaaggtcaaagtgcggatcaacgaaaccgtcaacgaccgtgat
ggcggcagcgtgagcggcactcgtattgtcgacactactgtcggccgtgcgctgctgtat
caggttgtgccaaaaggtctgtcgtacgacgtcgtcaacttgccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagactgtgatcttc
gctgaccagttgatgtacaccggctttgcatactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccagatcatcaatgctgctactgatgaa
gtgaaagaaatcgaaagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtccaaggccaacgacgaagtgtcgaaggcgatgatggctaac
ctctcgaaagagaaggttatcgaccgtcatggcgtagaagtcgatcaagagtcgttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcattgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctctactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaactgctaactccggttatctgactcgtcgtctg
gtagacgtggcgcaagacttggttgtgactgaagtcgactgcggcaccgaacacggtctg
ctgatgactccgcacatcgaaggcggcgacgttgtagagccgctgggtgagcgcgtactg
ggtcgagtaatcgcccgtgacgtattcaagccaggtaccgaggaaattatcgttcctgcc
ggcacactggtagacgagaagtgggtcgagttcattgaactcaacagcatcgacgaagtg
attgttcgctcgccgatcagctgcgaaacccgctacggcatttgcgccaagtgctacggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagttgaccatgcgtacgttccacattggtggtgcg
gcaagccggacctccgcagctgacagtgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaaacacgttgagcgagtggatggttgcctggttgctgtgtcccgttccggt
gagctggcaatcgctgatgactacggtcgtgagcgcgagcgttacaagctgccgtacggt
gccgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgcgaaagatcgtccagctgccggtaaagacatccgtcctgccgtgaagatg
gtcgatgacaacggcaaggacttgttgctgccaggcactgacgtaatcgctcagtacttc
ctgccagccaacgccctggtcggtgtagcggatggtgcgaagatcgcgatcggtgatgtt
atcgctcgtatcccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagctcgtcgtccgaaagaagcgtcgattctggctgaagtcagc
ggtaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgttaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgaacgtctgggcgcggatgacaaatttgtctcc
aagttcactcgtgtgttgctgggtatcaccaaggcgtcgttgtccactgagtcgttcatc
tcggcggcctccttccaggagaccactcgcgtactgaccgaagcagcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggttgtgggtcgtctgatcccggcgggt
accggtttggcttaccacagcgagcgcaagcgccgccgtgatgctgacaagccgctgcgc
gtaagcgccagtgaagtggaagctgcactgaccgaagcgctgaactcaagcggtaactga
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integrated database retrieval system
