Pantoea sp. SO10: FCN45_00710
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Entry
FCN45_00710 CDS
T06053
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN45_00710 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pans03019
]
FCN45_00710 (rhlB)
Enzymes [BR:
pans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCN45_00710 (rhlB)
Messenger RNA biogenesis [BR:
pans03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCN45_00710 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
QCP57995
LinkDB
All DBs
Position
complement(161152..162447)
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AA seq
431 aa
AA seq
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MSKTHLTEQKFSDFALHPQVVEALDTKGFSNCTPIQALALPFTLSGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAAEGRQINQPRALIMAPTRELAVQIHADAEPLAKVTGLKLGLAYG
GDGYDKQLKVLADGVDILVGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIR
WLFRRMPPATQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLVEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIEEYIGHGIPVSKYNSDALMSELPPPKRLQRSRSGNGPRRGGNNSNRRSG
APRNSNRKRSG
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcaccctcaggtg
gtagaagcccttgataccaaaggcttttctaactgcacgcctatccaggcgctcgcattg
ccttttacgctttcagggcgtgatgttgcgggtcaggcgcaaaccggtaccggcaaaacg
atggcgttcctgacgtcaacgtttcattatcttctttctcatcctgccgcagaaggtcgc
cagatcaatcagccacgtgcgctgatcatggccccgacgcgtgagctcgccgtacaaatt
catgccgatgcagaaccgttagcgaaagtcactggcttaaagctgggcctggcttatggt
ggcgacggctacgataaacagctgaaagtgctggctgatggtgtcgatattctggtgggc
accaccggacgtctgatcgactacgccaagcagaaccatgttaacctgggcgcgattcag
gttgttgtgctggatgaagccgatcgcatgttcgatctcggctttattaaagacattcgt
tggctgttccgccgcatgccgccggccacccaacgcctgagtatgctgttctctgcaacc
ttgtcttaccgcgtgcgtgaactggcgtttgagcacatgaacaacgccgaatacgtggaa
gttgaacccgagcagaaaaccggccaccgcattaaagaagagcttttttacccttcaaac
gaagagaaaatgcgcttgctgcagacgctggtagaagaagagtggccagatcgcgccatc
atcttcgccaacaccaagcaccgctgtgaagacatttggggccatctggctgccgatggt
catcgtgtgggtctgctgaccggcgatgtagcacagaaaaaacgtctgcgtatcctcgat
gacttcaccaaaggcgatgtggatatcctggttgccaccgacgtcgcggcacggggttta
cacattcctgccgtcacgcatgtgttcaactacgatctgcctgacgatcgcgaagactac
gttcaccgtattggtcgtactggccgcgcgggtgccagcggtcactccatcagcctggcg
tgcgaagagtacgcgctgaacctgccggcaatcgaagagtatattggtcacggtattccg
gtcagcaagtacaacagcgatgcgctgatgagcgaactgccaccgccgaaacgtctgcaa
cgcagccgctcgggtaacggcccacgccgtggcgggaacaacagtaaccgtcggagcggc
gcgccgcgcaatagcaaccgtaaacgttcgggttaa
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