Pantoea sp. SO10: FCN45_00720
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Entry
FCN45_00720 CDS
T06053
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pans
Pantoea sp. SO10
Pathway
pans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN45_00720 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pans03021
]
FCN45_00720 (rho)
03019 Messenger RNA biogenesis [BR:
pans03019
]
FCN45_00720 (rho)
Transcription machinery [BR:
pans03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FCN45_00720 (rho)
Messenger RNA biogenesis [BR:
pans03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FCN45_00720 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
QCP57997
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All DBs
Position
163243..164502
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENQARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHASKRMRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNYPDCLLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattaccctcggcgaaaat
atggggctggaaaaccaggcgcgtatgcgcaagcaggatattattttctctatcctgaaa
cagcacgcaaaaagcggcgaagacatctttggtgatggtgtgctggagatattgcaggac
ggatttggtttcctccgttctggagatagctcctacctcgccggtcccgatgatatctac
gtctctcccagccaaatccgccgcttcaacctccgcactggtgacaccatttctggcaag
attcgcccgccaaaagagggtgaacgctactttgcgctgttgaaagttaatgaagttaac
tatgacaagccggaaaacgcgcgtaacaagattctgttcgaaaaccttacgccgctgcac
gccagcaagcgtatgcgtatggaacgcggtaatggctcgactgaagatctgaccgcacgc
gtgctggatctggcttctccgattggtcgtggtcagcgtggtctgattgtggcgccgccg
aaagcgggtaaaaccatgctgctgcagaacatcgcgcagagcatcgcctacaactatcca
gattgcctgctgatggtgctgctgattgacgaacgtccggaagaagtgaccgagatgcag
cgtctggttaaaggtgaagtgatcgcttcgacctttgatgagccagcgtcacgtcacgtg
caggttgctgagatggtgatcgagaaggccaagcgcctggttgagcacaagaaagatgtg
atcatcctgcttgactccatcacgcgtctggcgcgtgcctacaacaccgtggttccagca
tcaggtaaagtgctgaccggtggtgtggatgctaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcacgtaacgtggaagagggcggcagcctgaccatcatcgcgaccgcgctg
gttgataccggttcgaagatggacgaagtgatttacgaagagtttaaaggtacaggtaac
atggaattgcacctctcgcgcaaaatcgccgagaagcgtgtatttccagcgattgactac
aatcgttccggtacccgtaaagaagagctgctcactacgcaggaagagctgcagaagatg
tggattctgcgcaaaatcatccatccaatgggtgaaatcgacgcgatggagttcctcatc
aacaaactggccatgacgaaaaccaacgacgaattcttcgatatgatgaagcgttcctaa
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