Pantoea sp. SO10: FCN45_01145
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Entry
FCN45_01145 CDS
T06053
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FCN45_01145 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pans03021
]
FCN45_01145 (rpoC)
03400 DNA repair and recombination proteins [BR:
pans03400
]
FCN45_01145 (rpoC)
Enzymes [BR:
pans01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FCN45_01145 (rpoC)
Transcription machinery [BR:
pans03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FCN45_01145 (rpoC)
DNA repair and recombination proteins [BR:
pans03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FCN45_01145 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QCP58067
LinkDB
All DBs
Position
249640..253863
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYTKNEQEEFVAKTSIIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIVAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMDNLQTETVINRDGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILIPRNTLIDEHWCDVIELNSVDAIKVRSVVGCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSSGKLVIVSRNVELKMIDEFGRTKESYKVPYGAVMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISAGDTLSRVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATISSVGSTDFLEGEQAEYSRIKISNRELEANGKIGATFMRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRSAGEAPV
APQVTADEASASLAELLNAGLGGSDDE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaagcctgagcgtgacggtcttttctgtgcccgt
atttttggaccggtaaaagactacgaatgcctgtgcggtaagtacaagcgtttaaaacat
cgcggcgtgatctgtgagaagtgtggcgttgaagttacacagaccaaagtacgtcgtgag
cgcatgggccacattgagttggcttcaccgactgcgcacatttggttcctgaaatcactg
ccttcgcgtatcggcttactgctggatatgccactgcgtgatatcgagcgcgtgctgtac
ttcgaatcttatgtggttatcgaaggcggcatgaccaacctggaaaaacgtcagattctg
accgaagagcagtaccttgacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagctatccaggcgctgctgaaaaacatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgagaccaactccgagaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgcccgctggtaccgctggacggtggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaataaccgtttgaaa
cgcctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggttgatgcactgctggataacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaaatctctggcagacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaaacgtgttgactactctggccgttcagttatcaccgttggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggctcttgagctgttcaaaccgttc
atctacggcaagttggaactgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgagcgcgaagaggctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaactctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtcaccagcgaacggcgagccaatcatc
gttccttcacaggacgttgttttgggtctgtactacatgacccgcgacaaagtgaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtgtttatcgcgctggc
ctggccgagctgcatgcacgcgttaaagtgcgtatcactgaatacaccaagaacgagcag
gaagagttcgttgcgaaaaccagcattatcgacaccaccattggtcgtgcgattctgtgg
atgatcgttccgaaaggcctgccttactccatcgtcaaccaggcgctgggtaagaaagcc
atttctaagatgctgaacacctgttaccgcattcttggcctgaagccgaccgttatcttt
gctgaccaaaccatgtacaccggttttgcttacgcagcccgttcaggtgcctctgtaggt
atcgacgacatggtcatcccagcgaagaaagcggaaatcgtagccgaagcggaagcggaa
gttgctgagattcaggaacagttccagtctggtctggtaactgctggcgaacgttacaat
aaagttatcgatatttgggccgccgctaacgaacgcgtttccaaagcgatgatggataac
ctgcaaactgaaaccgtgatcaaccgtgatggcgaagaagagcagcaggtatcgttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaactgctaactccggttatctgacgcgtcgtctg
gtcgacgtagcgcaggatctggttgttaccgaagatgactgcggcacgttcgaaggcatc
atgatgactccagtcatcgaaggtggcgacgttaaagagccgctgcgtgagcgtgtactg
ggtcgtgtaacggctgaagacgttctgaagccaggcactgcggacatcctgatcccgcgt
aacaccctgatcgatgaacactggtgtgatgtgatcgaactgaattcagtcgatgcgatt
aaagtgcgctcggttgttggctgtgaaaccgacttcggtgtgtgtgcacactgctacggt
cgcgatctggcacgtggtcacatcatcaacaaaggtgaggccatcggtgttatcgcagca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaagaacaaaggtactatcaagctg
accaacgcgaagtctgtaaccaactcctcagggaaactggttatcgtttcacgtaacgtt
gagctgaagatgatcgacgagttcggtcgtaccaaagagagctataaagtaccttacggt
gcggtcatggctaaaggtgatggcgagcaggttgccgcgggcgaaaccgtagcaaactgg
gatccgcataccatgccggtcatcaccgaagtgggcggtttcattcgcttcactgacatg
atcgacggtcagaccattacgcgtcagactgacgacttaaccggtctgtcatcgctggtg
gttctggattctgcagaacgtactgcgggtggtaaagatctgcgtcctgcgctgaaaatt
gttgatgccaacggaaatgatgttttgattccaggtaccgacatgccagcacagtacttc
ctgccgggcaaagcaattgttcagctggaagatggcgttaagatcagtgccggtgacacg
ctgtcgcgtgttccgcaggaatctggcggtaccaaggatattaccggtggtctgccgcgc
gttgctgacttgttcgaagcgcgccgtccgaaagagccagcaatcctggcggagatcagc
ggtatcatctccttcggtaaagagaccaaaggtaagcgtcgtctggtgattacgccggtt
gatggtagcgatccgtacgaagagatgattccaaaatggcgtcagcttaacgtattcgaa
ggtgagcgcgtagaacgtggtgacgtcgtatctgacggcccagagtctccgcacgacatc
ctgcgtctgcgtggcgtccatgctgtgacccgttacatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagtcatcgttcgtcagatg
ctgcgtaaagcaaccatctcgagcgtgggaagcaccgacttcctggaaggtgagcaggct
gaatactcacgcatcaagatctctaaccgtgaacttgaagcgaatggcaaaatcggcgca
acattcatgcgcgatctgctgggtatcaccaaagcgtcactggcaaccgaatcgttcatc
tctgcagcatcgttccaggagaccacgcgtgtcctgaccgaagcagcagttgcaggtaag
cgtgatgaactgcgcggcctgaaagagaacgtcatcgtgggtcgtctgatcccagccggt
accggttatgcttatcaccaggatcgtatgcgtcgccgctctgcgggcgaagcaccggtt
gcaccgcaggttactgcggatgaagcctctgcaagcctggcagaattgctgaacgccggt
ctgggcggaagcgacgacgagtaa
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