Pantoea sp. SO10: FCN45_02560
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Entry
FCN45_02560 CDS
T06053
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN45_02560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pans03019
]
FCN45_02560
03009 Ribosome biogenesis [BR:
pans03009
]
FCN45_02560
Enzymes [BR:
pans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCN45_02560
Messenger RNA biogenesis [BR:
pans03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCN45_02560
Ribosome biogenesis [BR:
pans03009
]
Prokaryotic type
rRNA helicases
FCN45_02560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCP58334
LinkDB
All DBs
Position
570727..572637
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AA seq
636 aa
AA seq
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MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPTVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGINVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLSKMQPGEDLDIETL
AAALLKMAQGERPLILPPEAPRPARREFSDRPDRGERRDSRDSRGPRESRDSRDGDRPRR
ERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMP
GEVLQHFTRTRILNKPMNMQLMGDAPVHERSERRPSAGGERRGNGAPRGDGAPRGEGAPR
RFSERREGGREGGRFSREGGRGPRPEGAAAPRRRDA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgaccttggcctgaacgccgacatcctcgaatca
ctgaacggtatgggctacgtaaagccttctccaatccaggctgagtgtattcctcatctg
ctggctggccgtgacgtgttgggtatggcgcagaccggtagtggtaaaactgcggcattc
tcactgccgctgctaaacaacattgatcctactgttaaagcaccgcaaattttggtgctg
gcacctacccgcgaattggcggtacaggttgctgaagccgtcacagaattctctaaacac
atgcgtggcattaacgtggtagccctgtacggcggccaacgttatgacgtacagctgcgc
gcactgcgtcagggaccacaagttgttgtcggtacccctggtcgtctgctggatcacctg
aagcgtggcacgttagatctgtctaacctgcgcggtctggtgctggacgaagcggatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagattccagacggt
catcagaccgcgctgttctcagccaccatgccagaagcgattcgccgtattaccaagcgc
ttcatgaaagatccacaggaagtgcgcatccagtcaagcctgactacgcgcccggacatt
tctcagtcttactggaccgcatacggccgtaaaactgatgcgctggttcgtttcctggaa
gcggaagatttcgatgcagccatcatcttcgtgcgtaccaaaaatgccacgctggaagtg
gccgaagcgctggagcgcagcggttataacagcgcagcactgaacggcgacatgaaccag
gcactgcgtgagcagacgctggagcgtttgaaagatggtcgtctcgacatcctgatcgca
accgacgttgcagcacgtggcctggacgttgagcgtatcagcctggttgtaaactttgat
atcccaatggatgcagagtcttacgttcaccgtatcggtcgtaccggccgtgctggtcgt
gcaggtcgtgcgttgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatcgaa
cgcaccatgaagctgaccattccagaagttgagttgccgaacgcagaactgctgggtgag
cgtcgtctggctaagttcgcggctaaagtacagcagcagctggaaagcagcgatctggat
cagtaccgcgcactgctgagcaaaatgcagccgggcgaagatctggatatcgaaacgctg
gccgcagcactgctgaaaatggctcaaggcgaacgtccactgattctgccaccagaagca
ccgcgtccagcacgtcgcgagttcagcgatcgtcctgaccgtggtgagcgtcgtgattca
cgtgattctcgtggtccacgcgaaagccgtgacagccgcgatggcgatcgtccacgtcgt
gaacgtcgtgacgttggcgaaatgcagctgtatcgcattgaagtgggccgtgatgatggt
gttgaagttcgtcacatcgttggcgcgatcgctaacgaaggcgacatcagcagccgttac
atcggtaacatcaagctgtttggtactcactcaaccatcgagctgccgaaaggcatgccg
ggcgaagtgctgcagcactttactcgtacgcgtattctgaacaaaccgatgaatatgcag
ctgatgggtgatgcgccagtgcacgagcgtagcgaacgtcgtccatctgctggcggcgaa
cgtcgtggcaatggcgcaccgcgcggtgatggtgctccacgtggcgaaggcgctccacgt
cgcttctccgaacgtcgtgaaggtggccgtgaaggcggacgcttcagccgtgaaggtggt
cgtggcccgcgtccagaaggcgctgctgcaccacgtcgtcgtgacgcataa
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