Pantoea sp. SO10: FCN45_06150
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Entry
FCN45_06150 CDS
T06053
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN45_06150 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pans03019
]
FCN45_06150 (rhlE)
Enzymes [BR:
pans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FCN45_06150 (rhlE)
Messenger RNA biogenesis [BR:
pans03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FCN45_06150 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Cullin_binding
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCP58977
LinkDB
All DBs
Position
1326661..1328049
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AA seq
462 aa
AA seq
DB search
MSFDSLGLSADILRAVAEQGYQEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLV
QRLTAKPSTARGRRPVRALILTPTRELAAQVGENVREYSQYLDIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKTLAEKLLTNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERLLKREIPRIELPGFEVDPSIKAEPIQNGRQQQGGGRGQGGRGQGQGRGQGGNVSRPHS
GNAPRPQGEARSARRPAQGASQAAPAANSGRRRPAPKKTGNA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgactctctcggcttaagtgccgatattttgcgtgcggtagcagaacaaggc
taccaagagccgacgccgattcagcgtcaggccattcctgtggtgctggctggtcgtgac
ctgctggcgagcgcccaaaccggcaccggtaaaaccgccggctttacgctgccgttggtg
cagcgtctgactgcaaaaccgtccacggcgcgtggccgccgtccggtgcgtgcgttgatc
ctgactccgacccgcgaactggcggctcaggttggcgagaacgtgcgtgagtacagccaa
tatctcgatatccgttcgctggtggtatttggcggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgttgacgtgctggtggcgacaccgggccgtctgctcgatctggcg
caccagaacgcagttgatctgtcacaggttgaaatcctcgtgctggatgaagcggatcgt
atgctcgatatgggcttcatccacgacatccgtcgcgtgctggcgcgtctgcctgctaag
cgtcagaacctgctgttctctgccaccttctctgacgagatcaaaacgctggcggaaaaa
ctgcttaccaacccagaacaggttgaagttgcgcgtcgtaacaccgcctctgagcaagtt
tcacagcaagtgcatttcgtggataagaagcgcaagcgggaactgctgtcgctgatgatt
ggtcgtgataactggcagcaagtgctggtgttcacccgtaccaaacacggcgccaatcat
ctggctgagcagctgaacaaagacggcatcaccgccgccgcgatccacggcaacaagagc
cagggcgcgcgcacccgtgcattggctgacttcaaatccggcggcattcgcgtgctggtc
gcgaccgacatcgcggcgcgtggtctggatatcgaagagctgccacacgtggtgaactac
gagctgccaaacgtggcggaagattacgtgcaccgtattggtcgtaccggccgtgcggct
gctaccggcgcggcactgtcgctggtgtgtgttgatgaacacaaactgctgcgtgacatt
gagcgtctgctgaagcgtgaaatcccgcgcatcgagctgcctggtttcgaagtcgatccc
agcatcaaagccgagccaatccagaacggtcgtcagcagcagggcggcggtcgcggtcaa
ggtggacgtggtcaaggccagggtcgcggtcagggcggcaacgtttctcgcccgcacagc
ggcaatgcgccacgtccgcagggtgaagcgcgttccgcgcgtcgtccagcgcagggcgca
agccaggctgcgccagccgccaacagcggtcgtcgtcgtccggcgccgaagaaaaccggg
aacgcctaa
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