Pantoea sp. SO10: FCN45_07585
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Entry
FCN45_07585 CDS
T06053
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN45_07585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pans03019
]
FCN45_07585
03009 Ribosome biogenesis [BR:
pans03009
]
FCN45_07585
Enzymes [BR:
pans01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FCN45_07585
Messenger RNA biogenesis [BR:
pans03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FCN45_07585
Ribosome biogenesis [BR:
pans03009
]
Prokaryotic type
rRNA processing factors
FCN45_07585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QCP59239
LinkDB
All DBs
Position
complement(1633885..1637148)
Genome browser
AA seq
1087 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAESL
QWDLSFRMKHWEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQME
TPHYSVLRVRTGEETQTLSYHLPKLHEAEMALPSEEEHAERRRPEQPALAAFAMPDAPPA
PVEVVKESQPAAEVKTKPSVAAPAVTNTGFVARLLSGLKKLFAGDAPAAAPAETKQETPA
VVAAESENTQQRGERRNNNNRRNNRRERTPRNGENGQVREGREPREPREAREPREAREPR
DNQDNRRNKRQNEPREARPVLSDEALEQRDEQQQQRREQRADRQRRRQEEKRAQQQDQKA
AEPVVQAPAVDENVEHEEERVQVMPRRKQRQLSQRVRVGETPDITVEAPVVHDAAVETAP
RAQYKEHPEASNDEQDDSDNRDSANMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMPL
ESAAASPEMASGKVWISYPVAQAQEEYSTQDAMHEVSDYGYQQTPDAETQPAAAVEPAVE
QVAAEEAVHQVEPQAHTDVPVVNTDDVTPIAVPVNEEPSVISAADEQVAQETAAEAEPAA
VAEEAKPEVSEVAAVVEQAPVDVSPAVEAQVEDVLAAPVAAEAEVTPVTEPHAPVAARDT
AVTTVETRFKHHATAPMTKAPAPAWEPEPVRNSDWVRPAFGFEGRGSAGGHSATHQATAP
ATRPESA
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaggagttgcgcgttgccctggttgat
ggacaacgtctgtacgatctggatattgaaagtcctggacacgaacagaaaaaagccaac
atatacaaaggtaaaatcacccgcgttgaacccagccttgaagctgcatttgtcgattat
ggtgcagaacgtcacggtttcctccctctgaaagaaatttcccgcgaatacttccccgcc
aattacaacgcacatggtcgtccgaatatcaaagatgtgctgcgtgaaggccaggaagtt
atcgttcaaattgataaagaggaacgcggtaataaaggtgcagcactcaccacctttatt
tctctggccggtagctatctggtattgatgccgaacaacccacgtgccggtggtatttca
cgccgcattgagggcgacgaccgtaccgaattaaaagaagcactttccgcactggaactt
ccagacggcatgggattgatcgtccgcactgcgggcgtgggtaaatctgccgaatcactg
cagtgggatctcagcttccgtatgaagcactgggaagccattaagaaagccgcagacagc
cgcccagcgcctttcctgatccatcaggaaagtaacgttatcgtgcgcgccttccgcgac
tatctgcgtcaggatatcggtgaaatccttatcgataatccaaaagtactggaactggcc
cgtcagcacattgctgcactgggtcgtccggacttcagcagcaaaatcaaactctacacc
ggtgaaatcccgctgttcagccactaccaaatcgaatcgcagattgaatccgccttccag
cgtgaagtgcgtctgccatcaggcggatcgattgttatcgatagcaccgaagccctgacg
gcgattgatatcaactccgcacgcgctacccgcggcggtgatatcgaagaaaccgcgtac
aacaccaacctggaagcggccgatgagattgctcgccaattgcgtctgcgcgatctcggc
ggcctgatcgttattgacttcatcgacatgacgccagtgcgccaccagcgcgcggtagaa
aaccgcctgcgtgaagcggtacgtcaggatcgtgcgcgtattcagattagccacatttca
cgcttcggcttgctggagatgtcgcgtcagcgtctgagcccgtcactgggtgaatccagc
catcacgtctgcccacgctgcagcggaaccggcaccatccgtgataacgaatcgctgtcg
ctgtctattctgcgtctgattgaagaagaagcgctgaaagacaacaccaaagaagtgcat
gccattgttccggttcaggtcgcctcttacctgctgaacgaaaagcgtgatgccgttagc
gccatcgaaaaacgccagggcggtgtgcgtgccatcatcgtgccaaacgatcagatggaa
acgccacactactcggtactgcgtgttcgtactggcgaagagacgcaaacgctgagctat
cacttaccgaaactgcacgaagcggaaatggcgctgccttctgaagaagagcacgctgag
cgtcgtcgtccggagcagccagcactggccgccttcgcgatgcctgatgcgccgcctgcg
ccggttgaagtggtgaaagagtctcagccagcagcagaagtgaaaaccaaaccatcagtt
gctgcgcctgcagtaaccaacactggtttcgtggctcgcctgctgagtggcttgaagaaa
ctgtttgccggtgatgcgcctgctgcggcgcctgctgaaactaagcaggaaaccccagcc
gttgttgccgctgaatctgaaaacacccagcagcgtggcgaacgtcgtaacaataacaac
cgtcgcaacaaccgtcgtgaacgtacgccgcgtaatggcgagaacggtcaggtgcgcgaa
ggtcgtgaaccgcgcgagccgcgtgaagcacgtgagccacgtgaagcccgcgaaccgcgt
gataatcaggacaaccgtcgtaacaagcgtcagaacgagccgcgtgaagcgcgtccagtg
ctgagcgatgaagcgcttgagcaacgtgatgagcagcagcaacagcgccgcgaacagcgt
gccgatcgccagcgtcgtcgtcaggaagaaaaacgtgctcagcagcaggatcagaaagcc
gctgaaccggttgttcaggcgcctgcggttgacgaaaacgttgagcacgaagaagaacgc
gttcaggtcatgccgcgtcgtaagcagcgtcagctgtcacagcgcgtgcgtgttggcgaa
acgcctgacatcactgtcgaagcgccggtggttcatgatgctgccgttgaaactgcgccg
cgtgctcagtacaaagagcatcctgaagccagcaatgacgagcaagatgatagcgataac
cgtgatagcgccaatatgccgcgccgttcacgtcgttcaccgcgtcatctgcgcgtaagc
ggtcagcgtcgtcgtcgctatcgtgacgagcgttacccaacgcagtctgcaatgccgctg
gaatctgctgctgcttcaccagaaatggcgtcaggcaaagtgtggatctcttacccggtt
gcgcaagcgcaggaagagtacagcacgcaagatgcgatgcatgaagtgtcggattacggt
taccagcaaacaccggatgccgagactcaacccgctgccgctgttgaaccggccgttgag
caggttgccgctgaagaagccgtacatcaggttgaaccgcaggcgcacaccgatgtgccc
gtggtgaatacggatgacgtcacgccgattgccgtgcccgttaacgaagagccatcagtg
atctctgctgctgacgaacaggttgcccaggaaaccgcggctgaagcggaaccggctgcc
gtggctgaagaagcgaagcctgaagtaagcgaagtggctgcagttgttgaacaggcgccg
gtggatgtatcgccagccgttgaagctcaggttgaagacgtgctggctgcgccagtcgcg
gctgaagccgaagtcacgccagtcactgaacctcatgcgccggttgcggcacgtgatacc
gcagtgaccacggttgagacgcgcttcaagcatcacgcgactgcaccgatgaccaaagca
ccagcaccggcgtgggaaccagaaccggttcgcaacagcgactgggtccgtccagccttt
ggcttcgagggccgcggctcagccggtggtcacagcgcgacgcatcaggcaaccgcaccg
gcaacccgtccggaaagcgcgtaa
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