Pantoea sp. SO10: FCN45_07725
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Entry
FCN45_07725 CDS
T06053
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FCN45_07725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pans03400
]
FCN45_07725
Enzymes [BR:
pans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FCN45_07725
DNA repair and recombination proteins [BR:
pans03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FCN45_07725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QCP59264
LinkDB
All DBs
Position
complement(1661194..1664637)
Genome browser
AA seq
1147 aa
AA seq
DB search
MSEQSRYTLPVKAGDHRQLGQLVGAAQALECASITERHSGPVLMITPDMQSALRLQEEIR
QFTDLPVTHLADWETLPYDSFSPHQDIISARLSTLYQLPNLTRGMLIMPVNTLMQRVCPH
SFLHGHALVMQQGQKLSRDALRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RIDFFDDEIDSLRLFDVDTQRTLEAVNAINLLPAHEFPTDKAAIELFRSRWRETFDVRRE
PEHVYQQVSKGTLPAGIEYWQPLFFEQALPTLFSYLPANTLLLNSGDLLASAERFWLDAN
ARFENRRIDPMRPLLEPVTLWLRPDTLMSELKAWPRMQLSSETLPEKAANTNLGYQPLPE
LTVQAQAKAPLDLLRQFLEQFSGQVIFSVESEGRRESLQELLARIKLRPQAIDHFDQAAN
QPLSLMIGASERGFIDTQRQLALICESDLLGERVSRRRQDNRRTINPDVLIRNLAELHPG
QPVVHLEHGVGRYIGLTTLEAGGIVAEYLMLSYAGDAKLYVPVSSLHLISRYAGGADENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKTGFAFKHDRDQYQLFCEGFPFE
TTPDQGQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENAKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQSQVLEQAREGKVDILIGTHKLLSSDLKW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRMAVKTFVREYDSLVVREAILREVLRGGQVYYLYNDVENIEKAAQRLADLVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDVPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMETIGFTLYMELLENAVDALKAGREPSLEDLTSNQTEIELRMPALLPDDFIPDV
NTRLSLYKRVASAADEQDLAELKVEMIDRFGKLPDAARNLLDVAGLRLVARELGIRKIEA
SDKGGFFEFAPQNRVNPGWLIGLLQKDPQQWKLDGPTRLKFTRDMADRKIRMEWVQGFVS
ELAKNRV
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaacagagtcgttataccctgccagtcaaagccggcgaccatcgccagctcggc
cagctcgtcggcgccgcgcaagcgcttgagtgcgccagcatcaccgaacgccacagcggt
ccggtgttgatgattaccccggatatgcaatctgccctgcgtctgcaggaggagattcgc
cagttcaccgatctgccggttacccatctcgctgactgggaaacgctgccctacgacagc
ttctcgccgcatcaggacatcatctcagctcgcctctccacgctgtatcaactgcccaac
ttaacgcgcggtatgctgattatgccggtcaacacgctgatgcagcgcgtatgtccgcac
agcttcctgcacggccatgcgctggtgatgcagcaagggcaaaagctgtcgcgcgatgcg
ctgcgcgatcagctggagcaggccggttatcgccacgtcgatcaggtgatggagcacggt
gaatacgccacgcgcggtgcgctgctcgatctgttcccgatgggcagcgaccaaccttat
cgcatcgacttctttgacgatgagatcgacagcctgcgtctgtttgacgtcgatacgcag
cgcacgctggaggcggtcaacgccatcaacctgttgccggcgcatgaattccccacggat
aaagccgccatcgagctgttccgcagccgctggcgcgaaacctttgacgtacggcgcgag
ccggagcatgtctatcagcaggtgagcaaaggcacgctgcccgccggtatcgaatactgg
cagccgctgttctttgagcaggcgttgccgacgctgttcagctatctgcccgccaatacg
ctgctgctcaacagcggcgatttgctggccagcgccgagcgcttctggcttgacgccaac
gcgcgctttgagaatcgccgtatcgatccgatgcgcccgctgctggagccggtcacgctg
tggctgcgtcccgacacgctgatgagcgaactgaaagcctggccgcgcatgcagttaagc
agcgagacgctgccagaaaaagcagcgaataccaatctcggttatcagccgctgccggaa
ttgacggtgcaggcgcaggccaaagcgccactcgatctgctgcgtcagttccttgaacaa
ttcagcggtcaggtgattttctcggttgagagtgaaggccggcgtgaaagcctgcaagag
ctgttggcgcgcattaaactgcgtccacaggctatcgatcactttgatcaggccgccaat
cagccgcttagcctgatgattggcgccagcgagcgcggctttatcgatacgcaacgccag
ctggcgttgatttgcgaaagcgatctgcttggcgagcgcgtcagtcgtcgtcgccaggat
aatcgccgcaccatcaatcctgatgtgctgatccgcaacctcgccgagctgcatcccggc
cagccggtggtgcatctggagcacggcgtggggcgttatatcggcctgaccacgctggaa
gctggcggcatcgtcgctgaatatctgatgctctcctatgcgggcgacgccaagctgtac
gtgccggtttcatcactgcatctgattagccgctatgccggtggcgcggatgaaaacgcg
ccgctgcataaacttggcagcgatgcctggtcacgcgcgcggcagaaagccgctgagaaa
gtgcgcgacgtggcggcagagctgctggatatttacgctcagcgcgcagccaaaaccggc
tttgcctttaagcacgatcgcgatcagtatcagctgttctgcgaaggcttcccgtttgaa
accacgccggatcaaggccaggcgatcaacgcggtgctgagcgacatgtgtcagccgctg
gcgatggatcgtctggtgtgcggcgacgtcggctttggtaaaaccgaagtggcgatgcgc
gctgcgtttctggcggttgagaacgccaaacaggtcgcggtgctggtgcccaccacgctg
ctggcgcagcagcattacgacaacttccgcgatcgtttcgctaactggccggtgcgcatt
gaaatgctgtcgcgcttccgcaccgccaaagagcagagtcaggtgctggaacaggcgcgc
gagggcaaagtcgatattctgattggcacccataagctgctgtcgagcgacctgaagtgg
cacgatctcggcctgctaattgtcgatgaagagcaccgctttggcgtgcgtcataaagag
cggatcaaggcgatgcgcgccgatgtcgatatcctgacgctcaccgccaccccgattccg
cgtaccctgaatatggcgatgagcggcatgcgcgatctgtcgattattgccacgccaccg
gcacgacgcatggcggtgaaaacctttgtgcgtgagtacgacagcctggtggtgcgcgag
gcaatcctgcgtgaagtgctgcgcggcggccaggtttactatctctacaatgacgtagag
aacatcgagaaagcggcgcagcgattggccgatctggtgccggaagcgcgcattgccatt
ggtcacggtcagatgcgcgaacgcgatctcgagcgggtgatgaatgatttccaccatcag
cgctttaacgtgctggtgtgtaccaccatcatcgaaaccggtatcgacgtacccagcgcc
aacaccattatcatcgaacgcgctgaccactttggtctggcgcagctgcatcagctgcgt
ggccgcgtgggacgttcgcaccatcaggcctatgcgtggctgctgacgccgcatccaaaa
gcgatgaccactgatgcgcaaaaacgtctggaagctatcgcgtcgctggaagatcttggc
gccggttttgcgctggcaacccacgatctggagatccgcggcgcgggtgagctgctcggc
gaggatcagagcggccaaatggaaaccatcggcttcacgctgtatatggagctgctggag
aacgcggtcgatgcgctgaaggcgggccgcgagccgtcgctggaagatctcaccagcaat
caaaccgaaattgaactgcgtatgcctgccctgctgccagatgattttatcccggatgtg
aatactcgcttgtcgctctacaagcgcgtggccagcgccgccgatgagcaggatttggcg
gaactgaaggttgagatgattgaccgcttcggcaagctgccggatgcagcgcgtaatctg
ctggatgttgccgggctgcgtttagtggcacgcgagttggggattcgtaagattgaagcc
agcgacaaaggcggattcttcgagtttgcgccgcagaatcgggttaatccgggctggctg
attggcctgctgcagaaagatcctcagcaatggaagctggatggcccaacgcgattgaag
ttcacccgcgatatggcggaccggaaaatacgtatggagtgggtgcagggatttgtcagc
gagctggcgaaaaaccgggtttag
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