Pantoea sp. SO10: FCN45_17180
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Entry
FCN45_17180 CDS
T06053
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FCN45_17180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pans03019
]
FCN45_17180
03016 Transfer RNA biogenesis [BR:
pans03016
]
FCN45_17180
Enzymes [BR:
pans01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FCN45_17180
Messenger RNA biogenesis [BR:
pans03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FCN45_17180
Transfer RNA biogenesis [BR:
pans03016
]
Prokaryotic type
tRNA degradation factors
FCN45_17180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
WHD_RNase_R
S1
RNase_II_C_S1
Rho_RNA_bind
LexA_DNA_bind
HTH_11
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
QCP61011
LinkDB
All DBs
Position
complement(3731708..3734158)
Genome browser
AA seq
816 aa
AA seq
DB search
MSKDPYQDREAEKYENPIPSREFILALLEKREKPTSRDDIAQELNITSEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRVEGQKDDFYLSAEQMKFCLH
GDVILAQPGSADRKGRREARVVRVLEPRNSQIVGRYFTDAGTGFVVPDDSRLSFDILIPQ
EETLNARMGSVVVVEITQRATRRTKAIGKVTELLGDDMGTSLAVDMAVRTHEIPHTWPEE
VEKQIAKLKEEVPEEAKLGRVDLRKLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHQRGTSVYFPSQVIPMLPEILSNGLCSLNPQVDRLCMVCEMTIS
SSGKLTGFKHYEAVMNSHARLTYNKVWNILQGDADLREQYAAQVPHLHELHNMYQVLETA
REQRGGISFETDEPKFIFNAERRIERVERTSRNDAHKLIEECMILANIASARFVEKNEEP
ALFRDHDRPSEDSIKSFRTVLNELGLSLPGGTKPHPTDYAALLKQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALASYAHFTSPIRRYPDLLLHRAIKYLLAKERGEVDGITTPT
GGYHYDMQQMLQLGQHCSLTERRADEATRDVADWLKCDFMQDQVGNVFNGVISSVTGFGF
FVRLNELFIDGLVHVSSLDNDYYRFDAVGQRLIGESGGRTYRLGDAVEVRVEAVHMDERK
IDFALISSKRVPRGEGKTEREREKRGGKPPAKRRRDAGKKGTFEPDSAFRGEKKKTAVAE
KPAKTEKKGKKVSEKTRKIAAATKSKRASKKQPDEA
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttatcaggatagagaagctgaaaaatacgaaaacccaattccaagc
cgcgaatttattctggcactgctggaaaaacgcgaaaagccgaccagccgcgatgacatc
gcgcaggaattgaatatcaccagcgaagagcagctggaagcgctgcgtcgtcgtctgcgc
gccatggagcgcgatggccagctggtgtttactcgccgtcaatgttacgccctgccagaa
cgtcttgatctgcttcgcggtaaagtgattggccatcgcgatggctatggcttcctgcgc
gtagaaggtcagaaagatgatttctatctctctgctgagcagatgaaattctgcctgcat
ggcgacgtgattctggcgcagccaggcagcgccgatcgtaaaggtcgtcgtgaagcgcgc
gtggtgcgcgtgcttgagccacgtaacagccagatcgtcggccgctactttaccgatgca
ggtactggttttgtggtgccggatgacagccgcctgagttttgacatcctgatcccgcaa
gaagaaacgcttaacgcgcgtatgggttcagtggtggtggttgaaatcacccaacgtgcg
acgcgtcgcaccaaagcgatcggcaaagtgaccgagctgctgggcgacgatatgggcacc
agccttgcggtcgatatggcggtgcgcacccatgaaatcccgcacacatggccggaagaa
gttgagaagcagatcgctaagctgaaagaagaagtaccggaagaagcgaagctgggacgt
gttgatttacgtaagttgccgctggtcaccattgatggtgaagatgcgcgtgactttgat
gatgcggttttctgcgagaagaaacgcggcggcggctggcgtttatgggtggccattgcc
gacgtcagctattacgtacgtccgggcacgccgctggacgatgaagcgcatcagcgcggc
acctcggtctatttcccgtcgcaggttatcccgatgctgccggagattctctccaacggc
ttgtgctcgctgaatccgcaggttgatcgtttgtgcatggtgtgtgagatgaccatctcc
tccagcggcaaacttaccggtttcaaacactatgaagcggtgatgaattcccatgcgcga
ctgacctacaacaaagtgtggaacattctgcaaggtgatgccgatctgcgtgaacaatac
gcggctcaggttcctcatctgcacgagttgcacaacatgtatcaggtgctggaaaccgcg
cgcgagcagcgtggcggcatttcgtttgagaccgatgaacccaagttcatcttcaacgcc
gagcgtcgcattgagcgcgttgagcgcacctcacgcaatgatgcgcataagctgattgaa
gagtgtatgattctcgccaacatcgcctcggcgcgttttgttgagaaaaatgaagagcct
gcgctgttccgcgatcacgatcgtccaagcgaagacagcatcaaaagcttccgtaccgta
ctgaacgagctgggcttaagcctgccgggtggcactaagccacacccgaccgattatgcc
gccttgctgaagcaagtggccgatcgcccagacgcagaaatgctgcaaaccatgctgctg
cgttcgatgaaacaggcggtttacgatcctgaaaaccggggtcacttcggcctggcgctg
gcgtcgtacgcgcacttcacctcgccgattcgccgctatccggatttgctgttgcatcgc
gccatcaaatatctgctggcaaaagagcgcggcgaagtggacggcatcaccacgccgacc
ggcggctatcactacgacatgcagcagatgctgcagctgggccagcactgttcactgacc
gagcgccgtgctgatgaagccacgcgcgatgttgccgattggctgaagtgtgacttcatg
caggatcaggtcggcaacgtgttcaacggcgtgatctccagtgtgaccggctttggtttc
ttcgtgcgtcttaacgaactgtttatcgatggtttggtgcacgtttcctcgctggataac
gactattatcgcttcgatgcggtgggtcagcgtctgattggtgaatccggcggccgtact
tatcgtctgggcgatgcggtggaagtgcgcgttgaagccgtgcatatggacgagcgtaaa
atcgacttcgcgctgatctccagcaagcgtgtaccgcgcggcgaaggcaaaaccgaacgt
gagcgcgagaaacgcggtggcaaaccgccagccaagcgtcgtcgtgatgccggcaagaag
ggcactttcgaacctgattcagcgttccgcggcgaaaagaaaaagactgcggttgctgaa
aaaccggctaaaaccgagaaaaaaggcaaaaaagtctccgagaaaacccgtaaaatcgcc
gccgccaccaagtctaagcgcgcgtcgaagaagcagcctgacgaagcctga
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