Pantoea sp. PSNIH1: PSNIH1_01985
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Entry
PSNIH1_01985 CDS
T03464
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
pant
Pantoea sp. PSNIH1
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pant03016
]
PSNIH1_01985 (truD)
Enzymes [BR:
pant01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
PSNIH1_01985 (truD)
Transfer RNA biogenesis [BR:
pant03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PSNIH1_01985 (truD)
Prokaryotic type
PSNIH1_01985 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AIX49099
LinkDB
All DBs
Position
complement(380579..381622)
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AA seq
347 aa
AA seq
DB search
MSELHYLHGVPAATGIIKARPDDFVVIEDLGYPYDGDGEQLLVRIRKTGCNTRFVAEALA
KYLGVPARDLSYAGMKDRHAVTEQTLCFRLPGNAMPVMSGFQLEGVEILQVIRHRRKLRT
GALAGNAFRLVIRDVSDRADVDARLQQIQAQGVPNYFGEQRFGRGGNNLQQAQRWAEEQF
HPRDRNMKGLLLSAARSYLFNQVTSARLQRNGSLQLAQAGDALQLAGRGSWFVAAADELP
ALQQRVAAHELRITAPLAGRGEVGTQGEVAAFEQQQLAQSPALLTLLTRERVDTARRAML
VVPDNLQWQWQDDATLALQFWLPAGSFATSLVRELLSNGAAAPLGDE
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagctgcactatctgcacggcgtgcctgctgccactggcataattaaagcgcgt
ccggatgattttgtggtgatcgaagatctcggttatccctatgacggcgacggcgagcag
ctgctggtacgcatccgcaaaacgggctgcaacacgcgttttgttgctgaagccctggca
aaatatctgggcgtgccggcgcgcgacctgagctatgccggcatgaaagatcgccacgcc
gtgactgaacagacgctctgtttccgcctgccgggtaacgcaatgccggtaatgagcggc
tttcagcttgaaggggttgagatcctgcaggtgatccggcacaggcgtaagctgcgtacc
ggcgcgctggcgggaaatgcctttcggctggtgatccgcgacgtgtctgatcgcgccgac
gttgacgcgcgcctgcagcagattcaggctcagggcgttcccaactattttggcgagcag
cgctttggccgcggcgggaataacctgcagcaggcgcagcgctgggcagaagagcagttt
catccgcgcgatcggaatatgaaaggcctgctgctgtcagccgcgcgtagctacctgttt
aatcaggtgaccagcgcgcgtctgcagcgcaacggctcactgcagctggcgcaggcaggc
gatgcgctgcagctcgccggacgcggcagctggtttgtcgccgctgccgatgagctgcca
gcgctgcagcagcgcgtggccgcgcatgagctgcgcatcacggcaccgctggcgggacgc
ggtgaggtgggcacgcagggagaagttgccgcattcgagcagcagcagctggcgcagtcg
ccggcactgctgacgctgctgacgcgtgaacgggttgataccgcccgccgcgcgatgctg
gtggtgccggataatctgcagtggcagtggcaggatgacgccacgctggccctgcagttc
tggctgcccgccggcagcttcgccaccagcctggtgcgcgagctgctgagcaacggcgct
gcggcaccgctcggcgacgagtag
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