Pantoea sp. PSNIH1: PSNIH1_03925
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Entry
PSNIH1_03925 CDS
T03464
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH1_03925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pant03019
]
PSNIH1_03925
03016 Transfer RNA biogenesis [BR:
pant03016
]
PSNIH1_03925
Enzymes [BR:
pant01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSNIH1_03925
Messenger RNA biogenesis [BR:
pant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSNIH1_03925
Transfer RNA biogenesis [BR:
pant03016
]
Prokaryotic type
tRNA degradation factors
PSNIH1_03925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
LexA_DNA_bind
VASP_tetra
Motif
Other DBs
NCBI-ProteinID:
AIX49452
LinkDB
All DBs
Position
complement(797405..799840)
Genome browser
AA seq
811 aa
AA seq
DB search
MSKDPFQDREAEKYDNPIPSREFILGLLEQREKPASREEIAGALNITSEDQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDFYLSAEQMKFCLH
GDVILAQPGGADRKGRREARVVRVLEPRNSQIVGRYFTDAGTGFVVPDDSRLSFDILIPQ
DATLDARMGSVVVVEIVQRATRRTKAIGKVTEILGDNMGTGLAVDMALRTHEIPHTWPEE
VEREIAKLKEEVPEAAKQGRIDLRQLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTALDDEAHQRGTSVYFPSQVVPMLPEILSNGLCSLNPQVDRLCMVCEMTIS
ASGKLTGYKHYEAVMNSHARLTYNKVWNILQGNPELREQYAAQVKHLEELHAMYEVLETA
REQRGGISFETEEAKFIFNAERRIERVERTVRNDAHKLIEECMILANIASARFVEKHQEP
ALFRDHDRPSEDSITSFRTVLSELGLSLPGGAKPQPVDYAELLDQIAERPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALASYAHFTSPIRRYPDLLLHRAIKYLLAKEQGMENGITTPN
GGYHYDMQQMLQLGQHCSMTERRADEATRDVADWLKCDFMQDQVGNVFNGVISSVTGFGF
FVRLSDLFIDGLVHVSTLDNDYYRFDAVGQRLIGESGGRTYRLGDAVEVRVDAVHMDERK
IDFALISSKRVPRGEGKTAREREKRSGKPATKRRRDAGKKGNFEPDAAFRGEKKPAAAQK
SEKKGNKVSEKTRKIAAATKAKRASKKSSAT
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggacagagaagctgaaaaatatgataacccgatccccagc
cgcgaatttattctcgggctgctggagcagcgggaaaaaccagccagccgcgaagagatt
gcgggggcgttaaacatcaccagtgaagatcagctggaggcgctgcgccgtcgtctgcgc
gcaatggagcgtgacggtcagctggtctttacccgtcgtcagtgctatgcgctgccggaa
cgcctcgacctgctgcgcggcaaagtgattggccatcgtgacggctacggctttttacgc
gctgaagggcaaaaagatgacttctatctttccgccgaacagatgaaattctgcctgcat
ggcgacgtgatcctggcgcagccaggcggtgccgatcgtaaaggtcgccgtgaagcgcgc
gtggtgcgggtgcttgaaccgcgcaacagccagattgtcggccgctactttaccgatgcc
ggcacgggcttcgtggtgccggacgatagccgtctgagctttgatattcttattccgcag
gacgcaacgcttgatgcccggatgggctctgttgtcgtggtcgagattgtgcagcgcgcc
acgcgccgcaccaaagctatcggtaaagtcaccgaaatcctcggcgacaatatgggcacc
ggtctggcagttgatatggcgctgcgtacgcatgaaattccgcacacctggccggaagag
gtcgaaagagagattgcgaagctgaaagaagaggtgccggaagcggcgaagcagggacgt
atcgatctgcgtcagctgccgctggttaccattgatggcgaagatgcccgcgacttcgat
gatgccgtctactgcgagaaaaagcgcggtggtggctggcgcctgtgggtagcgatcgct
gacgtaagttactacgtgcggccgggtacggcgctggatgacgaagcgcatcagcgcgga
acatcagtctacttcccgtcgcaggtcgtgccgatgctgcctgagatcctctccaacggc
ctctgctcgctgaatccgcaggttgaccgcctttgcatggtctgtgagatgactatctct
gccagcggtaaactgaccggctataagcattatgaagcggtgatgaactcacacgcgcga
ctgacctataacaaagtctggaatatcctgcagggtaatcccgagctgcgtgagcagtat
gcggcacaggtaaaacatctcgaagagctgcacgctatgtacgaggtgctggaaaccgca
cgcgagcagcgcggtggcatctcatttgaaacggaagaagcgaagtttatcttcaacgct
gagcgccgtattgagcgcgttgagcgcacggtacgtaacgacgcgcataaacttatcgaa
gagtgcatgatcctcgctaacatcgcgtctgcccgctttgtggagaaacaccaggagccg
gcgctgttccgcgatcacgatcgtccgagtgaagacagcatcaccagtttccgcaccgta
ctgagcgagctgggtctgagcctgccgggcggcgcaaaaccgcagcctgtggactacgcc
gaactgctggatcagatcgccgagcgtccggatgctgagatgctgcagaccatgctgctg
cgctccatgaaacaggcggtctacgatccggaaaaccgcggacactttggtctggcgctg
gcttcttacgcccactttacttcgccgatccgccgctatccggatctgctgctgcaccgg
gcgattaaatatctgctggcaaaagagcagggcatggaaaacggtatcactacgccgaac
ggcggctaccactatgatatgcagcagatgctgcagctgggtcagcactgttcgatgacc
gagcgccgcgctgatgaagcgacgcgcgacgttgctgactggctgaagtgcgacttcatg
caggatcaggtgggcaatgtgtttaacggcgtgatctccagcgtgaccggctttggcttc
tttgtgcggctgagcgatctgttcatcgatggcctggtgcatgtctccacgctggataac
gactactatcgctttgatgccgtcggacagcgtctgatcggcgagtcgggcggccgtacc
tatcgtcttggcgatgcggtggaagtgcgcgtggatgcggtgcacatggatgagcgtaaa
atcgattttgcactgatctccagcaagcgcgtgccgcgtggcgaaggcaaaaccgcgcgg
gaacgcgagaagcgcagcggcaagcctgccacaaagcgccgtcgcgacgcgggtaaaaaa
ggcaactttgaaccggatgcggctttccgtggtgaaaagaaaccggctgctgcgcagaaa
agtgagaaaaaaggcaataaagtctctgagaaaacccgtaaaatcgccgccgccactaag
gctaagcgggcatcaaaaaaaagcagcgcgacctga
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