Pantoea sp. PSNIH1: PSNIH1_06255
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Entry
PSNIH1_06255 CDS
T03464
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH1_06255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pant03019
]
PSNIH1_06255
Enzymes [BR:
pant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSNIH1_06255
Messenger RNA biogenesis [BR:
pant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSNIH1_06255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIX49871
LinkDB
All DBs
Position
complement(1290021..1291316)
Genome browser
AA seq
431 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVVEALDSKGFQHCTPIQALALPFALSGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAAEGRQVNQPRALIMAPTRELAVQIHADAEPLAKATGLKMGLAYG
GDGYDKQLKVLADGVDILVGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFDLGFIKDIR
WLFRRMPPATQRLSMLFSATLSYRVRELAFEHMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKYRCEDIWGHLAADGHRVGLLTGDVPQKKRLRILD
DFTKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDREDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIEEYIGHGIPVSKYNSDALLSDLPPAKRLQRNRTGNGQRRGGNNSNRRSS
APRNHNRKRPG
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaaccgaacagaagttttccgacttcgccctgcaccctcaggtc
gtggaagcccttgatagcaaaggctttcagcactgcacgcctatccaggcgctcgcactg
ccttttgcgctttcagggcgtgatgttgcgggtcaggcgcaaaccggtaccggcaaaacg
atggcgtttctgacgtcaacgtttcattatcttctttctcaccctgctgctgaagggcgc
caggttaatcagccacgtgcgctgatcatggcccctacgcgcgagctggccgtacagatt
cacgccgatgcggagccgctggctaaagcgaccggcctgaaaatgggtctggcttacggc
ggcgacggctatgacaagcagcttaaagtgctcgctgacggtgtcgacatcctggtgggc
actaccggacgtctgattgattacgcaaaacagaaccatgtgaatctgggcgctattcag
gttgtggtgctggacgaagccgatcgcatgttcgatctcggctttattaaagatattcgc
tggctattccgccgcatgccgcctgccacgcagcgtctgagcatgctgttttccgcaacg
ctctcttaccgcgtccgggaactggcgtttgagcatatgaacaacgcggaatatgtcgaa
gtggaaccggaacagaaaaccggccaccgcatcaaagaagagctcttctatccatccaat
gaagagaagatgcgtctgctgcagacgctgatcgaagaagagtggcccgatcgcgccatc
atctttgctaacaccaagtatcgctgtgaagatatctggggccatctggccgccgacggt
catcgcgtcggtctgctgaccggtgatgtcccgcagaaaaagcgcctgcgcattctcgat
gatttcaccaaaggcgacgtggatattctggtagcaacggatgttgcggcgcgcggtctg
catattccggccgtaacgcacgtctttaactacgatctgccggacgatcgcgaagattac
gttcaccgtattggtcgtaccggccgtgccggcgccagcggacactctatcagcctcgcg
tgtgaagagtatgcgctgaatctgcccgcgattgaggagtatatcggtcacggcattccg
gtcagcaaatacaacagcgatgcgctgctcagcgatctgccaccggcaaaacgtctgcag
cgcaaccgcaccggcaacggtcagcgtcgcggcggcaataacagtaatcgccggagcagc
gcgccccgtaaccataaccgtaaacgcccaggttaa
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