Pantoea sp. PSNIH1: PSNIH1_06430
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Entry
PSNIH1_06430 CDS
T03464
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH1_06430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pant03019
]
PSNIH1_06430
03400 DNA repair and recombination proteins [BR:
pant03400
]
PSNIH1_06430
Enzymes [BR:
pant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSNIH1_06430
Messenger RNA biogenesis [BR:
pant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSNIH1_06430
DNA repair and recombination proteins [BR:
pant03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSNIH1_06430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AIX49897
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All DBs
Position
1325358..1327184
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AA seq
608 aa
AA seq
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MAISAVHNQETLAQQVLHDTFGYQQFRPGQQSIIESALSGRDCLVVMPTGGGKSICYQIP
ALVQDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQQQVFADCRTGKLKLLY
IAPERLMMDNFLEGLQHWNPVMLAVDEAHCISQWGHDFRPEYGALGQLRQRFPQLPVMAL
TATADETTRNDIVHLLQMRDPLIQVSSFDRPNIRYTLVEKFKPTDQLLRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGIDSAQRAHVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMVWLRKCLEEKVPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCGNCDICLDPPRRYDGLVDGQKAL
SCIYRTGQRFGMSYIVEVLRGSASQRIRDNGHDKLPIYGLGREQSLEHWISVLRQLIHLG
MVTQNIAMHSALQLTEAARPVLRAEIPLMLAVPRTVTAKSRSSAPKVYGGNYDRKLFAKL
RKLRKAIADEENIPPYVVFNDATLIEMAEQLPVSASDMLSVNGVGHRKLERFGKPFLLMI
REHLDNDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggcaatttcggcagtgcacaatcaggaaacgctggcgcagcaggtgttacatgacacc
ttcggctatcagcagtttcgtccgggtcagcaatccattatcgagtcagcgctctcgggg
cgcgactgtctggtcgtcatgccgaccggcggcggcaaatcgatctgttatcagatcccg
gcgctggtgcaggacgggctgacactggtggtctccccgctgatttcactgatgaaagat
caggttgatcagctgctggccaacggcgtggcggcggcgtgtcttaactcgacgcagacg
cgcgaacagcagcagcaggtttttgccgattgccgtaccggaaagctcaaactgctctac
atcgctccggaacgtctgatgatggacaacttcctcgaggggctgcagcactggaatccg
gtgatgctggccgtcgatgaagcgcactgtatttcgcagtgggggcatgacttccggccg
gagtatggcgcactcgggcagctgaggcagcgctttccgcagctgccggtgatggcgctg
accgccacggccgatgaaaccacgcgtaacgacattgttcatttgctgcagatgcgcgat
ccgctgattcaggtcagcagctttgatcgtcctaacattcgctataccctggtggagaag
ttcaagcccaccgatcagctgctgcgctatgtgcaggagcagcgtggcaaaagcggcatt
atctactgcaacagccgggcaaaagtggaagataccgccgcgcgtctgcagagccgtggt
ctgagcgtgggcgcctatcacgccggcatcgacagcgcacagcgtgcgcatgtgcaggag
gcgtttcagcgcgacgatctgcagattgtggtcgctaccgtggcgtttggcatggggatc
aacaaacccaacgtacgctttgtggtgcattttgatatcccgcgcaacatcgaatcttac
tatcaggagaccggtcgcgccggacgtgacggcctgcctgctgaggcgatgatgctttac
gatccggcggatatggtctggctgcgcaaatgcctggaggagaaagtcccggggccgctg
caggatatcgagcgtcacaagctcaatgcgatgggcgcgtttgcggaagcgcaaacctgc
cggcgtctggtactgctgaactactttggcgaaggacgtcagcagccctgcggcaactgt
gatatctgcctcgatcctccccgccgctatgacgggctggtcgacgggcagaaagcgctg
tcgtgcatttaccgtaccggccagcgttttggcatgagctacattgtggaagtattgcgc
ggctcagccagccagcgtattcgcgataacggccacgacaaactgccgatctatggcctg
ggacgcgagcagagcctggagcactggatcagcgtactgcgtcagctcattcacctcggt
atggtgacacaaaatatcgccatgcactctgcgctgcagctcaccgaggctgcgcgcccg
gtactgcgcgctgaaataccgctaatgcttgcggtaccgcgcaccgtaacggcgaaaagc
cgcagcagtgcgccaaaagtgtacggcggcaactacgatcgcaagctgtttgccaagctg
cgtaagctgcgcaaggcgatagcagatgaagagaatattccgccttacgtggtgtttaat
gacgccacgctgattgaaatggcggaacagttgccggtcagcgcgtcagatatgctgagc
gtaaacggcgtagggcatcgcaagctggagcgctttggtaagccgttcctgctgatgatc
cgggaacatcttgataatgacgaataa
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