Pantoea sp. PSNIH1: PSNIH1_06665
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Entry
PSNIH1_06665 CDS
T03464
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSNIH1_06665 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pant03021
]
PSNIH1_06665 (rpoB)
03400 DNA repair and recombination proteins [BR:
pant03400
]
PSNIH1_06665 (rpoB)
Enzymes [BR:
pant01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSNIH1_06665 (rpoB)
Transcription machinery [BR:
pant03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSNIH1_06665 (rpoB)
DNA repair and recombination proteins [BR:
pant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSNIH1_06665 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AIX49935
LinkDB
All DBs
Position
1370601..1374629
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIA
SYSGNSELQYVSYRLGEPVFDVTECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGTVYVEKGRRITARHIRQLEKDSVQHIEVPVEYIAGKVVAKD
YIDLNTGELIVPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDIIEVMKKLIGIRNGIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGKVS
DEIHYLSAIEEGNYVIAQANTNLADDGSFVDDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEEEMYAGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIQAVLIAGGVEADKLDKLPRERWLELGLTDEEKQNTLEQLAGQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQRAYDLGTDVRQKVDLNTFSDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgttccctatctcctttctatccagcttgactcgtttcagaagttcatcgag
caagatccagaaggccaatacggtctggaagcagccttccgttccgtgttcccaatcgcg
agctacagcggcaactctgaattgcagtatgtcagctatcgcctgggtgagccggtcttt
gacgtaactgaatgtcagatccgtggcgtgacctattcggcaccgctgcgcgtgaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtctacatgggtgaaattccactcatgactgacaacggtacctttgttatcaatggt
actgagcgtgttatcgtttctcagctgcatcgtagtcctggcgtgttctttgacagcgat
aagggtaaaacgcactcttccggtaaagtgctttataacgcacgtatcatcccttaccgt
ggttcatggctcgacttcgagttcgatccaaaagataacctgttcgtccgtattgaccgt
cgtcgtaagctgccggccagtatcatcctgcgcgcgctggaatacaccactgagcagatc
ctcgatctgttcttcgaaaaagtggtctttgaaatccgcgacaacaagctgcagatggaa
ctggtgcctgagcgcctgcgtggcgaaacggcttccttcgatatcgaagccaacggcacg
gtctacgttgagaaaggtcgtcgcatcactgcgcgtcatattcgccagctggaaaaagat
agcgttcagcatatcgaagtcccggttgaatatatcgccggtaaagtcgttgctaaagac
tacatcgatctgaacaccggtgagctgattgttccggctaacatggaactgtcactggat
ctgctggcaaaactgagccagtcgggccacaagcgcatcgaaaccctgttcaccaacgat
ctggatcacggcccttatatctccgagaccctgcgtgttgacccaaccaacgatcgcctg
agcgcgctggttgagatctaccgcatgatgcgtccgggcgagccgccaacgcgtgaagca
gcggaaaacctgttcgagaacctgttcttctctgaagatcgttacgatctctctgcggtc
ggccgcatgaagttcaaccgttctctgctgcgtgatgagatcgaaggttcaggtatcctg
agcaaagaagatatcatcgaggtgatgaagaagctgatcggtatccgtaacggtatcggt
gaagtggatgacatcgatcaccttggtaaccgtcgtatccgttctgtcggtgagatggct
gagaaccagttccgcgtaggtctggttcgcgttgagcgtgcagtgaaagagcgtctgtca
ctgggcgatcttgatacgctgatgccgcaggacatgattaacgccaagccgatttcagcc
gcagtaaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgaaattacgcataagcgtcgtatttctgctctgggcccaggcggtctgacccgt
gagcgtgctggctttgaagtgcgtgacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgccggaaggcccgaacatcggcctgatcaactcactctctgtctacgcgcag
accaacgaatatggtttccttgagacaccataccgtcgcgttgttgatggcaaagtgagt
gacgaaattcattacctctctgcgattgaagagggtaactacgttatcgctcaggcgaac
accaaccttgctgatgatggtagctttgttgacgatctcgtcacctgccgtagcaaaggt
gaatcgagcctgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttctgtcggtgcgtcactgatcccgttcctggaacacgatgatgctaaccgcgccctg
atgggtgcgaacatgcaacgtcaggcggtcccgactctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgcagtagcggttgactccggtgtaactgccgtcgcgaaacgt
ggtggtaccgtacagtatgtagatgcatcccgtatcgttatcaaagttaacgaagaagag
atgtacgcaggcgaagccggtatcgacatctacaacctgaccaagtacacccgttcaaac
cagaacacctgtatcaaccagatgccgtgtgtctctctgggtgagccaatcgagcgcggt
gacgtgctggcagatggtccatccaccgatctgggtgagctggcgctgggtcagaacatg
cgcgtggcgttcatgccatggaacggttacaacttcgaagactccatcctcgtctcagag
cgtgtggttcaggaagaccgtttcaccacgatccacattcaggaactggcttgcgtgtcc
cgtgacaccaaactggggccggaagagatcaccgctgacatcccgaacgtcggcgaagct
gcgctctccaagctggatgaatccggtatcgtctatatcggtgcagaagtaaccggtggt
gacattctggtcggtaaggtaacgcctaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgcgctatctttggtgaaaaagcgtccgacgtgaaagactcgtcgctgcgcgta
ccgaatggcgtctctggtaccgttatcgatgtgcaggtctttacccgcgatggcgtggaa
aaagataagcgcgcgctggaaatcgaagagatgcagctgaagcaggcgaagaaagacctg
tctgaagaactgcagatccttgaagcgggtctgttcagccgtatccaggctgtgctgatc
gcgggcggcgttgaagcggacaagctggacaagctgccgcgcgagcgctggctggagctg
ggcctgactgacgaagagaagcagaacactctcgagcagctggccggacagtatgatgag
ctgaagcacgagtttgagaagaaactcgaagcgaagcgtcgcaaaatcacccagggcgac
gatctggcaccaggcgtgctgaagatcgttaaggtttatctggccgttaaacgtcagatc
cagcctggtgacaaaatggcaggccgtcacggtaacaaaggtgttatctctaagatcaac
ccgatcgaagatatgccttatgacgaaaacggcacgccggttgacatcgtactgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattctggaaacccacctgggtatggcg
gcgaaaggcattggtgagaagatcaatgcgatgctgaagaagcaggaagaagtcgccaaa
ttgcgtgagtttatccagcgtgcttacgatctgggcaccgacgtgcgtcagaaagttgat
ctgaacaccttctcggacgatgaagtgctgcgtctggcagagaacctgaaaaaaggtatg
ccaatcgccacgccagtgttcgacggtgcgaaagagagcgagatcaaagagctgctgcag
ctcggcggcctgccttcttctggtcagatcacgctgtttgatggccgtaccggtgagcag
tttgagcgtcaggtaaccgtaggttacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcacgcccgttcgaccggctcctacagcctcgttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggtgagatggaagtgtgggcactggaagca
tatggtgccgcgtataccctgcaggaaatgcttaccgttaagtctgatgacgtcaacggc
cgtacgaagatgtataaaaacatcgtcgatggcaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagatccgctcgctgggtatcaacatcgagctggaa
gacgagtaa
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