Pantoea sp. PSNIH1: PSNIH1_07105
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Entry
PSNIH1_07105 CDS
T03464
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSNIH1_07105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pant03400
]
PSNIH1_07105
DNA repair and recombination proteins [BR:
pant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSNIH1_07105
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSNIH1_07105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_25
AAA_23
AAA_21
nSTAND3
NACHT
Viral_helicase1
cobW
ScfRs
DUF1924
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AIX50017
LinkDB
All DBs
Position
complement(1474563..1477391)
Genome browser
AA seq
942 aa
AA seq
DB search
MDKIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVALAAQTVSQMVDQVLAQEEGRRLMLLAPVVKDRKGEHTKTLENLAAQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVIDRFRVRDDLATRLAESFETTLELSGGTAIVADMDDP
DSEEMLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDSDRVVQNPEL
SLAGGAIRGWDRRNFYYFQMLRSLAEHLDFDVEAPFSSLSDKARQVILYGSGKENIEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESNAVREELAKFISNRACTSCHGTRLRREARH
VFVEDTNLPTISEMSIGHAMEFFTNLKLSGQRAKIAEKVLKEIGDRLSFLVNVGLNYLSM
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLSTLIHLRDLGNT
VIVVEHDEDAIRAADHIIDIGPGAGVHGGQIVAEGDVHAIMAHEESLTGQFLSGKREIAV
PAERVKGDPAKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQQ
QLNGATSGEAAPYREIAGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPVRELFAGVPE
SRSRGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKSIHEVLEMTIEEARDFFEAVPALARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIAQLLEVLHQLRNQGNTIVVIEHNLDVIKTADW
IVDLGPEGGSGGGEILVAGTPETVAECEKSHTARFLKPMLKK
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagtccgcggtgctcgcacccacaatctgaaaaatattaacctgatc
attccacgcgataagctgatcgttgtcaccggtctctcaggttccgggaagtcatcgctg
gcgtttgatacgctctatgccgaaggtcagcggcgctatgtagagtccctctctgcttac
gcgcgccagtttctctcgctgatggagaagccggatgtcgatcacatcgaaggcctgtcg
cccgccatttccattgagcagaaatcgacttcgcataacccgcgctcgacggtgggtact
attactgaaatccacgactacctgcgcctgctgtttgcccgcgtgggtgagccgcgctgt
cccgatcacgacgtcgcgcttgcggcgcagaccgtaagccagatggtggatcaggtgctg
gcgcaggaagagggtcgccgcctgatgctgctggcaccggtggtgaaagatcgcaaaggt
gagcacaccaaaacgctggaaaacctggcggcgcagggttacatccgtgcccgcatcgat
ggtgaagtgtgcgatctctccgatccgccgaaacttgagctgcagaaaaagcacactatt
gaagtcgtcatcgatcgttttcgcgtgcgcgacgatctcgcgacacgtctggcggagtcg
tttgaaaccacgcttgaactcagcggcggcaccgcgatcgtggcggacatggacgatcct
gacagcgaagagatgctcttctccgccaacttcgcctgcccgatctgcggctacagcatg
cgtgagctggaaccgcgcctgttttcgttcaacaacccggccggcgcctgtccgacctgt
gacggccttggcgtgcagcaatacttcgattccgatcgcgtggtgcagaaccctgagctg
tcgctggcgggcggtgcgattcgcggctgggatcgccgcaacttctactatttccagatg
ctgcgctcgctcgctgagcatctcgattttgacgtagaggcgccgttcagcagcctgagc
gacaaagcgcgtcaggtgatcctgtatggctcgggcaaagagaatattgaattcaaatat
atcaacgatcgcggtgatacttccgtgcggcgtcatccgtttgaaggggtgctgcataat
atggagcgccgttataaagagacggagtccaatgcggtgcgcgaagagctggcgaagttt
atcagcaaccgcgcctgcaccagctgtcacggtacccgcctgcgccgcgaagcgcgccac
gtatttgttgaagataccaatctgcctaccatctctgaaatgagtattggtcatgcgatg
gagtttttcaccaaccttaaattgagcggccagcgcgcaaaaattgctgagaaagtcctg
aaagagatcggcgataggctgagtttcctggtcaacgtcggtctgaactatctctccatg
tcacgttcggctgaaacgctctccggcggcgaggcgcagcgtattcgtctggccagccag
attggcgcgggcctggttggcgtcatgtacgttcttgatgagccctctatcgggttacac
cagcgcgataacgaacgcctgctctcgaccctgatccacctgcgcgatctcggcaatacc
gtgattgtggtagagcatgacgaagacgcgatcagagcggctgaccatatcattgatatc
ggtccgggcgcgggcgtgcacggcggacagatagtggctgaaggtgatgtacacgccatt
atggcgcatgaagagtcgctgaccggccagttcctgagcggcaagcgcgaaatcgcagtg
ccggccgagcgggtgaaaggcgatccggctaaagtgctgaagctcaccggcgcgcgcggc
aataacctgaaggatgtgacgctgacgctgccggttggcctgtttacctgcatcaccggc
gtctccggctccgggaaatcaacgcttatcaacgatacgcttttcccgatcgcgcagcag
cagcttaacggtgcaaccagcggtgaagcggcaccttatcgtgagatcgccggccttgaa
cacttcgataaagtgatcgacatcgatcaaagcccgatcgggcgtacgccacgatctaac
ccggcgacctataccggcatttttacgccggtgcgtgaactctttgccggtgtgccggag
tcgcgctcgcgcggctacaatccgggccgcttcagctttaacgtgcgcggcggacgctgt
gaagcgtgccagggcgatggcgtgatcaaagtggaaatgcacttcctgcccgacatctat
gtgccgtgcgatcagtgtaaaggcaagcgctataaccgcgaaacgctggagatcaagtac
aaaggcaaaagcattcacgaagtgctggagatgacgattgaagaagcgcgcgacttcttt
gaagcggtcccggcgctggcacgcaagctgcagacgctgatggatgtcggcctctcctat
atccgtctcggccagtccgccaccacgctctccggtggtgaggcgcagcgcgtcaagctg
gcgcgtgagctgtcgaagcgcggtaccggacagacgctctatattctggatgagccgacc
accggcctgcactttgccgatattgcgcagctgctggaagtcctgcatcagctgcgtaat
cagggcaataccattgtggtgattgagcataatctggatgtgattaaaaccgcagactgg
atcgtggatctgggtcccgaaggcggcagcggcggcggtgagatcctggtcgccggtacg
ccggaaaccgtggcagagtgtgaaaagtcacataccgcacgcttcctgaaaccgatgctg
aagaagtaa
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