Pantoea sp. PSNIH1: PSNIH1_07680
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Entry
PSNIH1_07680 CDS
T03464
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH1_07680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pant03019
]
PSNIH1_07680
03016 Transfer RNA biogenesis [BR:
pant03016
]
PSNIH1_07680
Enzymes [BR:
pant01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PSNIH1_07680
Messenger RNA biogenesis [BR:
pant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSNIH1_07680
Transfer RNA biogenesis [BR:
pant03016
]
Prokaryotic type
tRNA degradation factors
PSNIH1_07680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
aRib
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_SLS1_2
S1_RRP5
Spt6_S1
DUF5813
Motif
Other DBs
NCBI-ProteinID:
AIX50124
LinkDB
All DBs
Position
1595332..1597464
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AA seq
710 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTADEIKQSRLDLVVA
GTQNAVLMVESEADILTEEQMLGAVVFGHDQQQVVIENINALVAEAGKPRWDWKPEATND
ALIARVAALAEARIADAYRITDKQERYAQVGVIKDETIAALLAEDAALDDAEIGDIVHSL
EKNVVRTRILSGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVAATLGTAR
DAQNLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPKQEE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDEKFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILSVMEQA
ISTPRQEISEFAPRIYTIKISSDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGQKAKEAIRRIEEITAEIEVGRIYSGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVMEVDRQGRVRLSIKEATEQKPAEAAAAVDASDAE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatccgatcgtacgcaaattccaatatggtcagcataccgtcacgctggaaacc
ggcatgatggcacgtcaggctaccgcggctgttatggtaagcatggatgacacagcggta
tttgtaaccgttgttggccagaagaaagcgaaaccaggccaggactttttcccgctgacc
gttaactatcaggagcgtacctatgctgctggtcgtatcccgggcagcttcttccgtcgc
gaaggccgtccaagcgaaggcgaaaccctgattgcgcgtctgattgaccgcccggtgcgt
ccgctgttcccggaaggcttcgttaacgaagtgcaggttatcgctactgtcgtttctgtt
aaccctcaggttaacccggacatcgtggcaatgattggtgcctctgctgcgctgtcactg
tcaggtattccgttcaacggtccaatcggttctgctcgcgttggttacatcaacgaccag
tatgtcctgaacccgaccgcagatgagatcaaacagtcacgtctggacctggtggttgcc
ggtacccagaacgcggtactgatggttgaatcggaagccgatatcctgactgaagagcag
atgctcggcgccgtggtatttggccacgaccagcagcaggttgttatcgaaaacatcaac
gcgctggttgccgaagcgggcaaaccgcgctgggactggaagccagaagcgactaacgat
gcactgattgcacgtgttgccgcgctggcggaagcgcgcatcgctgatgcttaccgcatc
accgataagcaggagcgttacgcacaggttggcgtgatcaaagatgagacgatcgctgcc
ctgctggctgaagatgctgcgctggatgatgcagaaatcggcgatatcgtgcatagcctc
gagaagaatgtggttcgtacccgcatcctgagcggcgaaccgcgtatcgatggtcgcgaa
aaagatatgatccgcggtctggacgttcgtaccggcgtactgccgcgtacgcacggctct
gcgctgttcacccgtggtgaaacgcaggcgctggttgctgctacgctgggcaccgcacgc
gatgcgcagaacctggatgagctgatgggcgagcgtaccgacagcttcctgttccactac
aacttccctccatactcagtgggcgaaaccggcatggttggctcaccaaagcgtcgtgaa
attggtcacggtcgtctggcgaagcgtggcgtactggcagttatgcctaagcaggaagag
ttcccgtacaccgtacgcgttgtatcagaaatcactgaatcaaacggttcttcttctatg
gcttccgtttgcggtgcttcactggcactgatggacgcaggcgtaccgatcaaagcagcc
gttgccggtattgctatgggtctggtgaaggaagatgagaagtttgtcgtgctgtctgac
atcctgggcgatgaagatcaccttggcgatatggacttcaaagtagcgggtagccgtgaa
ggtattaccgcgctgcagatggacatcaaaatcgaaggcatcacccgcgaaatcatgcag
gttgcgctgaaccaggctaagggtgcgcgtctgcatatcctgagcgtcatggagcaggct
atcagcacgccgcgtcaggagatctctgaattcgcaccgcgtatttacaccattaagatc
agctctgacaagatcaaagatgtgattggtaaaggcggctcggtaatccgtgcgctgacc
gaagagaccggtactaccattgaaatcgaagatgacggcaccgtaaaaatcgctgcgacc
gacggtcagaaagcgaaagaagcgattcgtcgtatcgaagagatcaccgctgagattgaa
gtgggccgcatctactccggtaaagttacccgtatcgttgatttcggtgcgttcgtggct
atcggtggcggtaaagaaggtctggttcatatttctcagattgccgacaagcgcgtagag
aaagtgaccgactacctgcagatgggtcaggaagtaccggttaaggtgatggaagttgac
cgtcagggccgcgtacgtctgagcatcaaagaggcaactgagcagaagccggcagaagcc
gctgctgctgtggacgcttctgacgctgaataa
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