Pantoea sp. PSNIH1: PSNIH1_07690
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Entry
PSNIH1_07690 CDS
T03464
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH1_07690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pant03019
]
PSNIH1_07690
03009 Ribosome biogenesis [BR:
pant03009
]
PSNIH1_07690
Enzymes [BR:
pant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSNIH1_07690
Messenger RNA biogenesis [BR:
pant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSNIH1_07690
Ribosome biogenesis [BR:
pant03009
]
Prokaryotic type
rRNA helicases
PSNIH1_07690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
DRTGG
Cas3-like_C_2
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AIX50126
LinkDB
All DBs
Position
1598713..1600614
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AA seq
633 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNVDPSVRAPQILVLAPTRELAVQVAEAMTEFSKHMRNVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWTAYGRKTEALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDQYRALLSKMQPEEELDIETL
AAALLKMAQGERPLIVPADAPRPQRREFRDRDDRADRPRRDRDSRGESRDGDRPRRERRD
VGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGEVL
QHFTRTRILNKPMNMQLLGDAQPHERTERRSGGRDFGGERRSSAPRGDSAPRGEGAPRRF
SERREGGREGGRFSREAGRGPRRDEGTSRRRDA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgatctgggcctgaacgccgacatcctcgaatct
ctgaacggtatgggctacgttaagccttccccaatccaggctgagtgtattcctcacctg
ctggcgggccgcgatgttctgggtatggcgcagaccggtagtggtaaaaccgcggcgttc
tcactgccgctgttaaacaacgttgatccttctgtccgcgcaccacagattctggtgctg
gcaccgacccgcgaactggcggtgcaggtggctgaagcgatgacagaattctctaaacat
atgcgtaacgtcaacgtcgtggccctgtatggcggccagcgttatgacgtacagctgcgc
gccctgcgtcagggaccacagatcgttgtgggtaccccgggccgcctgctggaccacctg
aagcgtggtactctggacctctctaacctgcgtggtctggttctggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggt
catcagaccgcactgttctctgcaactatgccagaagcgattcgtcgtattaccaaacgc
ttcatgaaagatccacaggaagtgcgtatccagtcaagcgtgaccacgcgtccggatatt
tcacagtcttactggaccgcttacggccgtaaaactgaagcgctggtgcgtttcctggaa
gcagaagactttgatgcagccatcattttcgtgcgtaccaaaaacgcaacgctggaagtg
gctgaagccttagagcgcagcggctacaacagtgccgcgctgaacggcgacatgaaccag
gcactgcgtgagcagacgctggagcgcctgaaagatggccgtcttgatatcctgattgca
accgacgttgcggcgcgcggtctggacgttgagcgtatcagcctggttgttaactacgat
atcccgatggatgcggagtcttatgttcaccgtatcggccgtaccggtcgtgcgggccgc
gctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacattgaa
cgcaccatgaagctgactattccggaagtagaactgccaaacgcagagctgctgggtgag
cgtcgtctggccaaatttgcagcaaaagtacagcagcagctggaaagcagcgatctggat
cagtatcgcgcgctgctgagcaaaatgcagccggaagaagagctagatatcgaaacgctg
gcggctgccctgctgaaaatggctcagggtgaacgtccactgatcgtaccggctgacgcg
ccgcgtccgcagcgtcgtgagttccgcgatcgtgatgaccgcgctgaccgtccgcgtcgt
gaccgcgacagccgtggtgagagccgtgatggcgatcgtccacgtcgtgagcgtcgtgac
gttggcgacatgcagctttaccgcattgaagtgggtcgcgatgacggcgttgaagttcgc
cacattgtgggtgctatcgctaacgaaggcgatatcagcagccgctacattggtaacatc
aagctgtttggcacgcactccaccatcgaactgccaaaaggcatgccgggtgaagttctg
cagcacttcacgcgcacgcgtattctgaacaagccgatgaatatgcagctgctgggtgat
gcacagccgcacgagcgtactgagcgccgcagtggcggtcgtgacttcggtggcgagcgt
cgcagcagcgcaccgcgtggcgacagtgcaccacgtggtgaaggcgcaccgcgtcgcttc
tccgagcgtcgtgaaggtggccgcgaaggcggacgctttagccgcgaagcgggccgtggc
ccacgtcgcgacgaaggcacctcacgtcgtcgtgatgcataa
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