Pantoea sp. PSNIH1: PSNIH1_09365
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Entry
PSNIH1_09365 CDS
T03464
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pant
Pantoea sp. PSNIH1
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pant03400
]
PSNIH1_09365
DNA repair and recombination proteins [BR:
pant03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSNIH1_09365
Archaeal homologous recombinant proteins
PSNIH1_09365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
nSTAND3
ABC_tran
NTPase_1
cobW
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIX50425
LinkDB
All DBs
Position
complement(1960844..1964521)
Genome browser
AA seq
1225 aa
AA seq
DB search
MKILTLRFKNLNALRGEWLIDFRQEPFASNGLFAITGATGAGKTTLLDAICLALYHQTPR
LGGLSQSENQLMTRDTAECLAEVEFEIKGEAWRAFWSQNRARGQADGKLQAPRVELARVA
DNQIVADKVGDKLKAIESLSGLDFARFTRSMMLSQGQFAAFLNARPGERAELLEELTGTE
IYGDISIHIFERWRAARGALETLRARAGGIALLDEAQRASLTQQLETLSAEERALNAQLT
QAQTQQQWLAQAQQLTQEQQDADAARQAAEQAWQQASAERQQLARAEPAEKLRAGLQLRE
QLQQDSDAQQQLVRQLQAQQQQAETTLQQAERDYQQALQKRDEAVEAGQQLETLLTEQVL
PLDQQIARTAQQLSEQQQQLTQQQQAVARSEQALQQQQQVSERLQLQLAEQQAWRTREAA
TAGWGPELARWQADIGHLEEREQAATQLAGQQQRQQRQLAQLQQTLAAREQAAKPLAQAE
TESRQQREQAEQALTSLENQQRSADLRNALARYQQQRAPRQQLTLLAAQWQSLQPQRVQR
AARLTQLQQSYLQGEETLQKLRDSWKREHQALLDLRHLCELERTIARLSDERARLQPDAP
CPLCGSCQHPAVADYQQLRPDENQQRLTALETAVAQLKEAGTAQGEQQKLSLQQQQALEE
ELAELDRQLATIDTRWQALCTPLGLHFTPAQHAEFTAWQQQLEAQELTEQQQLQAREEAA
AVLQQAKDAHQQQQQRWQQHLQEQQLAQQQRESAQQQLADLEQRFRDEQQALQHAAARLT
EQLAAHQLRLPEPAGRASWFAAQQQRWQRWQESEQLLTSLQPQIARAGSEQHSLQQTLQR
EQQQQESLQHALTLMQQQQQDLQQQRSQLFGTRSVTEARRQQHTLLQQLEQALAGALQQW
QQAQSGLHSLQGQLAQTYSQQAALTERLQQAQQQFSQALRQSEFADEAALHAALLPEEVL
LPLRARLQQLEQQRLQQIALYEQLEQRLAQHQQQRPAGFNDEQAAALSQQLETLRLALRD
NARQQGEAQQQLQSDAHLRQQQQALLAEIAADEAELVQLSRLNDLIGSAKGDKFRRFAQG
LTLDHLVWLANRQLDRLHGRYLLQRRLSDELELEVVDTWQADATRDTRTLSGGESFLVSL
ALALALSDLVSHKTRIESLFLDEGFGTLDAETLDAALDALDALNASGKTIGVISHVEAMK
ERIPVQIRVRKMNGLGYSKLQLPGE
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctgacgctacgttttaaaaatctcaacgcgctgcgcggtgaatggctgatc
gacttccgccaggagccgttcgccagcaacggtctgtttgccatcacgggcgctaccggc
gccggcaaaaccacgctgctggatgcgatctgcctggcgctctatcaccagacgccgcgc
cttggcgggctgtcgcagagtgagaatcagctgatgacgcgcgacaccgccgagtgtctg
gctgaagtcgagtttgaaatcaaaggtgaagcctggcgcgccttctggagccagaaccgg
gcgcgcggtcaggctgacggcaagctgcaggcgccgcgcgtggagctggcgcgggtcgct
gataatcagatcgtggcggataaagtcggcgataagctgaaagccatagagtcgctctcc
gggctcgattttgcccgcttcacccgctcaatgatgctgtcacagggtcagtttgccgcg
tttctcaacgcccggcccggcgagcgtgccgaactgctggaggagctgaccggtaccgaa
atttatggcgatatctccatccatatctttgaacgctggcgcgcggcgcgcggcgcgctt
gagacgctgcgcgcccgtgccggcggcatcgcgctgctggatgaggcgcagcgggcgtcg
ctcacacagcagctggagaccttaagcgcggaggagcgcgcgctgaatgcacagcttacg
caggcgcagacgcagcagcagtggctggcgcaggcacagcagctgacgcaggagcagcag
gacgctgacgcggcgcgccaggcagcggagcaggcgtggcagcaggcgtccgcagagcgc
cagcagctggcgcgcgccgagccggcagagaagctgcgcgccggactgcagctgcgtgaa
cagctgcagcaggacagtgatgcacagcagcagctggtccggcagctacaggcgcagcag
cagcaggctgaaaccacgctgcagcaggcggaacgcgattatcagcaggcgctgcagaag
cgcgatgaggcggtggaagccggacagcagctcgaaacgctgctgactgagcaggtgctg
ccgctcgatcagcagatagcgcgcaccgcgcagcagctgagtgaacagcagcagcagctg
acgcagcagcagcaggcggtcgcccgcagcgaacaggcgctgcagcagcagcaacaggtg
agtgaacgcttacagctacagctggctgaacagcaggcgtggcgcacgcgcgaagcggct
accgccggctgggggccggagctggcgcgctggcaggctgatatcggacaccttgaggag
cgtgaacaggcggcgacgcagcttgccggacagcagcagcggcagcagcggcagctggcg
cagctacagcagacgctggcagcgcgtgaacaggcggctaagccattagcgcaggcggag
acggagagccgccagcagcgcgaacaggctgagcaggcgctgacctctctggaaaatcag
cagcgcagcgccgatctgcgcaatgctcttgcgcgctatcagcagcagcgcgccccgcgt
cagcagctgacgctgctggccgcgcagtggcaatcgctgcaaccgcagcgcgtacagcgg
gctgcccggctgacgcagctgcagcagagttacctgcagggtgaagagacactgcagaaa
ctgcgcgacagctggaagcgcgagcatcaggcgctgctcgatctgcgtcacctgtgcgaa
ctggaacggaccattgcccggctctctgatgagcgcgccagactacagcctgacgccccc
tgcccgctgtgtggttcctgtcagcacccggcggtagcggactatcagcagctccggccg
gatgagaatcagcagcggcttaccgcgctggagacggcagtggcgcagctgaaagaggcg
ggcacggcacagggcgaacagcagaaactctctctgcagcagcagcaggcgctggaagag
gagctggctgaactggatcgccagctggccaccatcgataccaggtggcaggcgctgtgc
accccactggggctgcactttacgccggcgcagcatgcagagttcactgcctggcagcag
cagctggaggcgcaggagctgacggagcaacagcagctgcaggcgcgtgaagaggcggcg
gcagtgctgcagcaggctaaagatgcccatcagcagcagcagcagcggtggcagcagcat
ctgcaggagcagcagcttgcacagcagcagcgggagagcgcacagcagcagctggccgat
ctggagcagcgtttcagagatgaacagcaggcgctgcagcacgctgcggcgcggctgacg
gagcagctcgcggcccatcagcttcgcctgccggaacccgccggacgcgccagctggttt
gccgcacagcagcagcgctggcagcgctggcaagagagtgagcagttactgacttctctg
cagccgcagatcgccagagcggggagcgagcagcatagcctgcagcagacgctgcagcgt
gaacagcagcagcaggagagcctgcagcacgctctgacgctgatgcagcagcagcagcag
gatctgcagcagcagcgcagccagctgtttggcacgcgcagcgtaacggaggcgcgccgg
cagcagcacacgctactgcagcagctggaacaggcgctggcaggggcgctgcagcagtgg
cagcaggcgcaaagcggactgcacagcctgcagggtcagctggcgcagacgtacagccag
caggccgccctgacggagcgcctgcagcaggcgcaacagcagttcagccaggcgctgcgg
cagagcgaatttgctgatgaagcagcactgcacgcggcgctgctgccggaagaggtgctg
ctgccgctgcgcgcccgtctgcagcagctggagcagcagcgtttgcagcagattgctctt
tatgaacagctggagcagcggctggcgcagcatcagcagcagcgtcccgctggcttcaat
gatgaacaggctgccgctctcagccagcagctggagacattacgcctggcgctgcgtgat
aacgcgcgccagcagggagaagcgcagcagcagctgcagagtgatgcacacctgcgtcag
cagcagcaggcgctgctggcagagatcgccgccgatgaagctgagctggtgcagctgagc
cgcctcaacgatctgatcggttcagccaaaggtgacaagttccgccggtttgcgcagggg
ttaacgctggatcatctggtctggctggcgaatcgtcagctcgatcgcctgcatggtcgc
tatctgctgcagcgacgcctcagcgatgagctggagcttgaggtggtggatacctggcag
gcggacgcaacccgcgatacccggacgctttcgggcggtgagagttttctggtgagtctg
gcgctggcgctggcgctctccgatctggtcagccacaaaacccgcatcgaatctctgttc
cttgatgaagggtttggcacgctggatgctgagacgctcgatgccgcactcgacgcgctg
gatgcgcttaacgccagcgggaaaaccatcggcgtgatcagccacgttgaggcgatgaaa
gagcgtatcccggttcagatccgggtgcggaaaatgaatggtctgggatacagcaagctg
cagctgccgggggagtaa
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