Pantoea sp. PSNIH1: PSNIH1_13960
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Entry
PSNIH1_13960 CDS
T03464
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pant
Pantoea sp. PSNIH1
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pant03016
]
PSNIH1_13960
Enzymes [BR:
pant01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSNIH1_13960
Transfer RNA biogenesis [BR:
pant03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSNIH1_13960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
AIX51248
LinkDB
All DBs
Position
2932774..2934708
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKEKLHAQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
TAVIHTDKDRESAEPDTLIEPFLTRFVGRVQKKDDRLAIVPDHPLLKDAIQCRAVRGLTH
DFQNGDWAVAEMRRHPLKGDRGFYAELTEFIVTADDHLAPWWVTLSRHNLEREAPESECG
GMLDEQLTREDLTALNFVTIDSASTQDMDDALYAEAQADGSLLLTIAIADPTAYVAEGSE
LDKLAARRAFTNYLPGFNIPMLPRELSDNICSLRLHEKRPVLACRVTVQPDGALADDVHF
FAAWIESKAKLVYDNVSDWLENSGSWQPENEAIAEQIRLLHRLCLARSEWRQTHALVFKD
RPDFRFLLGEKGEVLDIIAEHRRIANRMVEEAMILANICAANVLQKKLGFGIYNLHTGFD
LANAEQVAGVLAGHGITVDPQAITTLEGFRQMRRELDAQPTQYLDSRIRRFQSFAEIGTE
PGPHFGLGLDAYATWTSPIRKFGDMINHRLLKAIVRGESIARPQSDVTVIMGERRRLNRM
AERDVGDWLYARFLTPFAGSERKFSAEIIDVSRGGMRVRLQENGAVAFIPAPFIHAVRDE
LVCSQESGTVQVQGEVVYRVTDIIDVTIAEVRMETRSVVARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgctcgcgcagctgaaagagaagcttcacgcgcagactccg
cgcgccgaaggcgttgtgaaaggcacagaaaaaggctttggcttccttgaagttgatgct
cagaaaagctacttcattccgccaccgcaaatgaagaaagtgatgcacggcgatcgtatc
accgcggtaatccacaccgataaagatcgtgaaagtgcagagccggataccctgattgag
ccgtttctgacgcgcttcgtcggccgggtgcagaaaaaagacgatcgtctcgccatcgtg
ccggatcatccgctgctgaaagatgccattcagtgtcgcgccgtgcgcggtctgacgcac
gatttccagaacggtgactgggctgtggctgaaatgcgtcgccatccgctgaaaggcgat
cgcggcttttatgctgagctgactgaatttatcgttaccgcagacgaccacctggcgccg
tggtgggtcacgctgtcgcgccataacctggagcgcgaagcgccagagagtgaatgcggc
ggaatgctggatgagcagctgacgcgtgaagatctcaccgcgctgaactttgtcaccatc
gacagcgccagtacgcaggatatggacgatgcgctctatgcggaagcgcaggcggatggc
agcctgctgctgaccatcgctattgccgatccgaccgcttacgtagcggaaggcagcgag
cttgataagctggccgcccggcgcgcgtttaccaactaccttcccggctttaacattcct
atgctgccgcgcgagctctccgataatatctgttcgctgcgcctgcatgagaaacgtccg
gtgctcgcctgccgggtgacggtccagccggatggcgcactcgctgacgacgtgcatttc
tttgcagcctggattgaatccaaagccaaactggtttacgacaacgtctcagactggctg
gaaaacagcggcagctggcagccggaaaatgaggcgattgctgagcagatccgtctgctg
catcgtctctgcctggcgcgcagtgaatggcgtcagacccatgcgctggtatttaaagat
cgccccgatttccgcttcctgctgggagagaaaggcgaagtgctggatattatcgctgaa
catcgtcgtatcgctaaccgcatggttgaagaggcgatgattctggccaacatctgcgcg
gcgaacgtgctgcagaaaaaactgggttttggcatctacaacctgcacaccggcttcgat
ctggccaacgctgaacaggtagccggcgtgctggctggtcacggcattaccgtcgatccg
caggccattacgacactggaagggttccgtcagatgcgtcgcgaactcgacgcgcagccg
acacagtatctcgacagccgcattcgccgtttccagagctttgctgagattggcaccgaa
cccggcccgcactttggtctgggtctggatgcctatgcgacgtggacctcaccgatccgt
aagtttggcgatatgatcaaccatcgcctgctgaaagctattgtgcgcggtgagagcatt
gcccgtccgcagagtgacgttacggttattatgggtgagcgtcgtcgccttaaccggatg
gctgagcgcgatgtgggtgactggctttatgcgcgtttcctgacgcctttcgccggcagc
gagcgcaaattcagcgccgagatcattgatgtatcgcgcggcggtatgcgcgtacgcctg
caggagaacggtgcggtggcctttattccggcgccgtttattcatgcggtacgcgatgag
ctggtctgctcgcaggagagcggcacggtgcaggttcaaggtgaagtggtgtatcgcgtc
accgatattattgatgtcaccatcgccgaagtgcgcatggagacccgcagcgtggttgcc
cgcccggcagcctga
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