Papio anubis (olive baboon): 101003042
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Entry
101003042 CDS
T07474
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
panu
Papio anubis (olive baboon)
Pathway
panu03030
DNA replication
panu03410
Base excision repair
panu03420
Nucleotide excision repair
panu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
panu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101003042 (LIG1)
03410 Base excision repair
101003042 (LIG1)
03420 Nucleotide excision repair
101003042 (LIG1)
03430 Mismatch repair
101003042 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
panu03032
]
101003042 (LIG1)
03400 DNA repair and recombination proteins [BR:
panu03400
]
101003042 (LIG1)
Enzymes [BR:
panu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101003042 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
101003042 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101003042 (LIG1)
DNA replication proteins [BR:
panu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101003042 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101003042 (LIG1)
DNA repair and recombination proteins [BR:
panu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101003042 (LIG1)
NER (nucleotide excision repair)
Other NER factors
101003042 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
101003042 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DUF1685
Motif
Other DBs
NCBI-GeneID:
101003042
NCBI-ProteinID:
XP_009193117
Ensembl:
ENSPANG00000011694
LinkDB
All DBs
Position
20:528229..580221
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNGSRETEPPPKAALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEALSPAKGQKPAPDCSQVSPPRSATSPENNASLSDTSPRDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSADEDREAKRKKEEEEVETPEESLTEAEVATEKEGEDRDQ
PTTPPKPLKTSEAETLTESVSEPEVATRQELQEEEEQTKPPRSAPKTLSSFFTPRKPAIK
KEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNSYHPVEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPXPRPYVRIDGAVTPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacggcagcagagagacggagccccctccgaaggcggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccaggcaggaaggcg
gcccgggtcctgggcagcgaaggggaagaggaggatgaagcccttagccctgctaaaggc
cagaagcctgccccggactgctcacaggtctccccgccccgttccgccacatctcctgaa
aacaacgcttccctctctgacacctctcccagggacagctccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgcggacgaggacagagaagccaaaaggaagaaggaggaggaagaagtggagacccca
gaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacagggaccag
cccaccacacctcccaagcccctaaagacctccgaagcagagaccctgacggaaagcgtt
tcggagcctgaggtggccacgaggcaggaactgcaggaggaggaagagcagaccaagcct
ccccgcagcgctcccaagacactcagcagcttcttcacgccccggaagccagcaatcaaa
aaagaagtgaaggaggaggagccaggggctccaggaaaggagggagctgctgagggaccc
ctggacccatccggttacaatcctgccaagaacagctaccatcccgtggaagacgcctgc
tggaaaccaggccagaaggtcccttacctggctgtggcccggacgtttgagaagatcgag
gaggtgtctgcccggctccggatggtggagacactgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctcccggtcctctacctcagcctcaaccaccttgggcca
ccgcagcagggcctggagcttggcgtgggtgatggcgtccttctcaaggcagtggcccag
gccacaggtcggcagctggagtccgtccgggctgaggcagccgagaagggcgacgtgggg
ctggtggccgagaacagccgcagcacccagaggctcatgctgccaccacctccgctcact
gcttccggggtcttcagcaagttccgtgacatcgccaggctcactggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccgg
ttcatcgccaggtccctgagcggacggctacgccttgggctggcagagcagtcggtgctg
gccgccctctcccaggctgtgagcctcacgccaccaggccaagaattcccaccagccgtg
gtggatgctgggaagggcaagacagcagaggccagaaagacgtggctggaggagcaaggc
atgatcctgaagcagacattctgcgaggtgcccgacctggaccgaattatccccgtgctg
ctggagcacggcctggaacgtctcccggagcactgcaagctgagcccagggattcccctg
aaaccaatgttggcccatcccacacggggtgtcagtgaggtcctgaaacgcttcgaggag
gcagctttcacctgcgaatacaaatatgatgggcagagggcacagatccacgccctggaa
ggtggggaggtgaagatcttcagcaggaatcaggaagacaacactggaaagtacccggac
atcatcagccgcatccccaagattaaactcccatcggtcacatccttcatcctggacact
gaagccgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaagtggatgcatccgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgccacctctctggac
accaaggacgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgtgag
gggctgatggtgaagaccctggatgtcgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaaacgggccggccggtacgggggcttcctgctg
gcctcctatgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgatgaggagctggaggagcatcaccagagcctcaaggccctggtgctgccangcccc
cgcccttatgtgcggatagatggtgccgtgactcccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgtgccgacctctccctctcccccatctaccctgctgcgcggggc
ctggtggatagtgacaaggggatttcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcacaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa
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