Pseudocolwellia antarctica: ACPUVN_16805
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Entry
ACPUVN_16805 CDS
T12088
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
panv Pseudocolwellia antarctica
Pathway
panv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPUVN_16805 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panv03021
]
ACPUVN_16805 (rho)
03019 Messenger RNA biogenesis [BR:
panv03019
]
ACPUVN_16805 (rho)
Transcription machinery [BR:
panv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACPUVN_16805 (rho)
Messenger RNA biogenesis [BR:
panv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACPUVN_16805 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
AAA
Spore_III_AA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
XRX23728
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All DBs
Position
3886193..3887452
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AA seq
419 aa
AA seq
DB search
MNLTELKEKSISELVKLAEEMKLEHLARTRKQDIIFAILKAHAKGGEDIFGGGVLEILQD
GFGFLRSSDSSYLAGPDDIYVSPSQIRRFSMRTGDSIHGKIRPPKDGERYFALLKVNEVN
SDRPENSRNKILFENLTPIHPIDRLVMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAHNNPDCELMVLLIDERPEEVTEMRRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKILTGGVDANALHRPKRF
FGAARKIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIHF
NRSGTRREELLTKPEELQKMWILRKIVHEMGEIDAMEFMIDNLAMTKTNNEFFDSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttaccgaacttaaagaaaaatcaatcagcgaactagttaagttagctgaagaa
atgaaattagagcatttagctcgtactcgtaaacaagacattattttcgctatattaaaa
gcacacgctaaaggcggtgaagatattttcggcggtggtgttttagaaatactacaggat
ggtttcgggtttttacgttcatcagattcatcttatttggcaggaccagatgatatatat
gtatcacctagtcaaattagacgttttagtatgcgcacgggggatagtattcacggaaag
ataagacctcctaaagatggcgaacgttattttgcccttttaaaagttaacgaagttaac
tcagaccgcccagaaaactctcgcaataaaattctttttgaaaacctaacgcctatacac
ccaatcgaccgtttagttatggaacgaggaaatggttctacggaagatatcactgcgcgt
gttttagatttagcgtctccaataggtaaaggacaacgtggactaatcgttgctccacca
aaagcaggtaaaacgcttttattacaaaatattgcccaaagtattgcacacaataatcca
gactgtgaattaatggttttgcttattgatgagcgcccagaagaagtaacagaaatgaga
cgcttagttaaaggtgaagttattgcttcaacttttgatgaaccagcaagtcgtcacgtt
caagtagctgaaatggtaattgaaaaagccaagcgtttagttgaacacaagaaagatgtt
gttattttacttgattcaattacacgtttagctcgtgcttataacacggtaattccatct
tcaggtaaaatcttaacaggtggtgttgatgctaatgcattacatcgtccgaaacgtttc
tttggtgcagcacgtaaaattgaagaaggtggtagtttaactattattgctactgctctt
gtagatacgggttcaaaaatggacgaagttatttacgaagagtttaaaggtacaggtaat
atggaattacatctttctcgtaaaattgctgagaaacgtgtattccctgctattcacttt
aaccgcagtggtactcgtcgtgaagaattattaactaagccagaggaattacaaaaaatg
tggatcttacgtaaaatcgttcatgaaatgggcgaaatagatgcgatggaattcatgatt
gataatctagcgatgactaaaacaaataatgaatttttcgattcaatgaagagaaaataa
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