Pandoraea sp. XJJ-1: OYT13_05555
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Entry
OYT13_05555 CDS
T10414
Symbol
gyrA
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
panx Pandoraea sp. XJJ-1
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
panx03032
]
OYT13_05555 (gyrA)
03400 DNA repair and recombination proteins [BR:
panx03400
]
OYT13_05555 (gyrA)
Enzymes [BR:
panx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
OYT13_05555 (gyrA)
DNA replication proteins [BR:
panx03032
]
Prokaryotic type
DNA Topoisomerases
OYT13_05555 (gyrA)
DNA repair and recombination proteins [BR:
panx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OYT13_05555 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
WAL83916
LinkDB
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Position
1203633..1206260
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AA seq
875 aa
AA seq
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MDQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRALFAMHELNNDWN
RAYKKSARIVGDVIGKYHPHGDASVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAM
RYTEVRMAKIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLLNGSSGIAVGMAT
NIPPHNLNEVVEGCLHVLKHPEATIDELIEIIPAPDFPTAGIIYGISGVREGYRTGRGRV
VMRAKTHFEDIDRGQRVAIIVDELPYQVNKRSLLERIAELVNEKRIEGISDIRDESDKSG
MRVVIELKRGEVPEVVLNNLYKHTQLQDTFGMNMVALVDGQPKLLNLREMLVHFLAHRRE
VITRRTIYELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKAALMEKAWDSSVV
RDMLARAESDTQGGRAAYRPEGLDAAVGMQADGLYRLSETQAQEILQMRLQRLTGLEQDK
IVSEYKEVMAQIADLLDILARPERVTAIIGDELTAVRAEFGDERRSTIEHNATELDTEDL
ITPQDMVVTLSHSGYIKSMPLSEYRAQKRGGRGKQAAATKDDDWIDTLFIANTHDTILCF
SNRGRVYWIKVYEVPQGSRTSRGRPIVNMFPLQDGEKINVVLPVKAYTEDRFVFMATSLG
TVKKTPLTAFSRPLKKGIIAVNLDDGDVLIGAAITDGAHDVMLFSDSGKAVRFDENDVRP
MGREARGVRGMQLEDGQTVIALLVAENEQQSVLTATENGYGKRTSITEYTRHGRGTKGMI
AIQTSERNGRVVAATLVEPDDEIMLITTGGVLIRTRVSEIREMGRATQGVTLISLDEGTT
LSGLQRIVESDAEIAENGGDAQDGDETPEADVTES
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggatcagttcgccaaagaaactctcccgatttcgcttgaagaagaaatgcggcggtcg
tatctcgattacgccatgagcgtgatcgtcggccgcgccctgccagacgtgcgcgacggc
ctgaagccggtgcaccgccgtgcactgtttgccatgcacgagttgaataacgactggaac
cgggcatacaagaaatcggcacgtatcgtcggtgacgtcatcggtaagtaccacccgcac
ggcgacgcctctgtatacgacaccatcgttcgtatggcgcagccgttctcgctgcgctac
atgctggtcgacgggcaggggaacttcggctcggtcgacggcgacaacgccgctgccatg
cgatacaccgaagtgcgcatggccaagatcggccacgagctgctcgcggacatcgacaag
gaaaccgtcgacttcggtccgaactacgacggcagcgagaaagagccattgatcttgccg
gcccgcatcccgaacctgctgctcaacggttcgtcggggattgcggtcggcatggccacg
aacattccgccgcacaatctcaacgaagtcgtggaaggctgtctgcacgtgctcaagcac
ccggaagccaccatcgacgaactcatcgagatcattccggccccggatttcccgacggcc
ggcatcatctacggcatctccggcgtgcgcgagggctaccgcaccggtcgcggtcgtgtg
gtgatgcgagcgaagactcacttcgaagacatcgatcgcggccagcgcgtggcgatcatc
gtcgacgagctgccgtatcaggtgaacaagcgctcactgctcgagcgtattgccgagctg
gtcaacgagaagcgtattgaagggatttccgacattcgcgacgagtccgacaagagcggc
atgcgcgtggtgatcgaactcaagcgcggcgaagtgcccgaggttgtgctcaacaatctc
tataagcacacgcagctgcaagacacgttcggcatgaacatggtggcgctggtcgacggc
cagcccaagctgctgaacctgcgcgaaatgctggtgcacttccttgcgcaccgccgcgaa
gtgattactcgccgcacgatctacgaactgcgtcgcgcccgtgagcgtgggcatgtgctc
gaaggtctggcggtagcgcttgctaacatcgacgacttcatcgcgatcatcaaggcggca
ccgacgccgccgatcgcgaaggccgcgttgatggaaaaggcatgggattcgtcggtcgtg
cgcgacatgctcgcgcgggccgaaagcgatacgcagggcggccgtgcggcctaccgtccg
gaagggctcgacgccgccgtgggcatgcaggccgacggactctaccgtctgtcggagacg
caggcgcaggaaattctgcagatgcgtctgcagcgcctgaccggtctggaacaggacaag
atcgtttccgagtacaaggaagtgatggcccagatcgccgacctgctcgacatcctggcg
cgccctgaacgcgtgacggcgatcatcggcgacgaactgacggccgtgcgcgccgagttc
ggcgacgagcgtcgttcgaccatcgaacacaacgccaccgaactcgacaccgaagacctg
attacgccgcaggacatggtggttacgctgtcgcactcgggctacatcaagtcgatgccg
ttgtccgaataccgcgcacagaagcgcggtggccgaggcaagcaggctgccgcgaccaag
gacgacgactggatcgacacgctgttcattgccaatacacacgatacgattctgtgcttc
tcgaatcgcggccgcgtgtattggatcaaggtctatgaagtgccgcaggggtcacgaacc
tcgcgcgggcgtccgatcgtcaatatgttcccgttgcaggacggcgagaagatcaacgtg
gtgctgccggtcaaggcatacacggaagatcgcttcgtgttcatggccacgagcctgggc
acggtcaagaagacgccgctgacggccttcagccgtccgctcaagaagggcatcatcgcg
gtgaatctcgatgacggcgacgtgttgatcggcgcggccatcaccgacggtgcccacgac
gtcatgttgttctcggacagcggcaaggcggtgcgtttcgacgaaaacgatgtgcgtccg
atgggacgcgaagcgcgtggcgtgcgcggcatgcagctcgaagacgggcagacggtcatc
gcgctgctggttgccgagaacgagcagcagtcggtgctcacggcgaccgaaaacggctac
ggcaaacgcacgtcgatcaccgaatatacgcgccacggccgtggcactaagggtatgatt
gcgatccagacgagcgaacgcaacggccgggtggtcgcggcgacgctggtcgagccggat
gacgagatcatgctgatcacgaccggcggggtgctgatccgtacgcgcgtgtcggaaatt
cgcgaaatgggccgggccacgcagggggtgacgctgatcagcctggacgaaggcacgacg
ctttcgggcctgcaacgcatcgtcgagtccgatgccgaaatcgcggagaatggcggtgat
gctcaagatggcgacgagacgccggaagcggatgtcacggaatcatga
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