Pandoraea sp. XJJ-1: OYT13_09655
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Entry
OYT13_09655 CDS
T10414
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
panx Pandoraea sp. XJJ-1
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panx03019
]
OYT13_09655 (hrpA)
Enzymes [BR:
panx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OYT13_09655 (hrpA)
Messenger RNA biogenesis [BR:
panx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OYT13_09655 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_19
NACHT
AAA_22
T2SSE
nSTAND_NTPase5
AAA_30
nSTAND3
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WAL84651
LinkDB
All DBs
Position
2110168..2114259
Genome browser
AA seq
1363 aa
AA seq
DB search
MAPGHTRAQPTVTASTPKPARLPKPANTGQAGGPNPAAGRRTTPAERAARDAERLAARQA
AANPLPDIVFPEALPVSGRRDEIARAIAGHQVVIVSGETGSGKTTQLPKICLALGRGLGA
GGTGLIGHTQPRRIAASATARRIADELNTPLGDIVGFKVRFNDTLSHGASVKLMTDGILL
AETQTDPLLRAYDTLIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDADRFAR
HFGTGEGDHLRPAPVIEVSGRLYPVEVRYRPIQDDARIANALGREGSRASARDRERDLMD
GIVDAVDELCREGAGDVLVFLPGEREIREAAESLRKHHPPHTEILPLFARLSGPEQERVF
KPSNARRIVLATNVAETSLTVPGVRYVVDAGTARVKRYSYRNKVEQLQIEPISQAAANQR
AGRCGRVADGVCIRLYDEADFQARARFTDPEILRSSLAAVILRMQSLRLAKVEEFPFIEP
PPGRAVADGYQLLGELGAVDDTNQLTPLGRELARLPLDPRVGRMILAARDQQSLREVLII
ASALAVQDPRDRPLEAQDAADNAHRKFADERSEFLSWLKIWQWFEEAIAHKKSNRLLGQA
CRDNFLSQLRLREWRDVHSQLLTVVREQGWRINASEATYEQVHLALLAGLLGNIGCKADD
DPHFLGAHGIKFHIWPGSSLVKKAGRWVMAGELVETSRLYARCIARIEPEWIERVGKHLV
KTSLSDAHWEKKAAQVVAYERGMLYGLTIYARRRMNFGPRDPRRAREIFLRSALVEGEWE
TKLPFYAHNRKLIADIEQLEHKSRRQDVLVDDELIYAYYDAHVPADLYDGASFEHWYRET
AKGSPKLLYLVRDDLMRHEAAGVTTDLFPKKTAIAGIDMVLSYHFEPGSPRDGVTLAVPL
YALNQVDARRCEWLVPGMLKEKAHLLMKSLPQKLRRHFVPLPEFAAGFVDRATFGQGALL
DALIADAREQTGVMLKSSDFKFEMLPAHLSMNFKVIDEHGRQLGMGRNLPQLRAELGQQA
QRTFQQLAAKSGATPTRGSAVEPDAHGASATTSPAARGEARGAGRAGTQAAPSAAAVEPG
RYDNLTAWSFGELPEMLEIRRGGQTLFGYPALVERGDHCDLEVFDDPHEAQRQHRAGLRR
LFAIQLREQVKYLEKNIPGLQQMAMQYMNLGTQEALREQIVDLALERACLQLPWPSDNAS
FVARKDEGRGRLTLLAQEIARLAGQILTEYATLQKKLAQAKPFAQAYADLTAQLQRLIGK
RFLIDTPYAQLAHFPRYLKAMAGRIDKLKADPTRDARAMSELGPLLQNWQRATSQRRDQG
DARLEEFRWLLEELRVSLFAQELRTPMPVSVKRLHKVWEALQR
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggctccggggcatacgcgcgcccaacccacggtcaccgcgtcgactccaaagcccgcc
aggctgcccaaacccgcgaacacggggcaggccggcggcccgaacccggcagcggggcga
cgcacgacgccggccgagcgcgccgcgcgcgacgccgaacgcctcgcggcgcgccaggcc
gccgccaatccgcttcccgacatcgtctttcccgaggcgctgcccgtctccggccggcgc
gacgagattgcgcgcgccatcgccggccatcaggtcgtcatcgtgagcggcgagaccggc
tcgggcaagaccactcagcttcccaaaatctgcctcgcgctcggccgcgggcttggcgcg
ggcggcaccggcctgatcggccacacccaaccacgtcggatcgccgcgtcggccaccgcg
cgccgcatcgccgacgaactcaacaccccgcttggcgacatcgtcggcttcaaggtgcgc
ttcaacgacaccttgtcccacggcgcgtccgtcaaactgatgaccgacggcattctgctt
gccgagacgcagaccgatccgctgttgcgcgcgtacgacaccctcatcattgacgaggcg
cacgagcgcagcctgaacatcgactttctgctcggctacctcaagcagttgctgccgcgt
cggcccgacctgaaagtcatcatcacgtcggccaccatcgacgccgatcgcttcgcccgc
catttcggcacgggcgagggcgaccacctgcgtccagcgccggtcatcgaagtgagcggg
cgcctgtaccccgtggaagtgcgctaccgcccgatccaggacgatgcgcgcatcgcgaac
gcgctggggcgcgaaggcagccgcgccagcgcgcgcgatcgcgaacgggacctgatggac
gggatcgtcgacgccgtcgacgaactgtgccgcgaaggcgccggcgacgtgctcgtcttc
ctgcccggcgagcgcgaaatccgcgaggcggccgagtcgttgcgcaagcatcatccgccg
cacaccgaaattctgccgctcttcgcgcgcctctcgggtcccgagcaggagcgcgtgttc
aaaccgtccaacgcgcgccgtatcgtgctggccaccaacgtggcggaaacctcgctcacg
gtgccgggtgttcgctacgtggtcgatgccggtaccgcgcgcgtcaagcgatactcgtac
cgcaacaaggtcgaacaactacagatcgagccgatctcgcaggccgccgccaaccagcgc
gcggggcgctgcggccgcgtggccgacggcgtgtgtattcgtctgtacgacgaagctgac
ttccaggcgcgcgcgcgcttcacggatccggaaatcctgcgctcgtcgcttgccgccgtc
attctgcgcatgcagtcgctgcggctcgccaaggtcgaggaattcccgttcatcgaaccg
ccgcccggccgggccgttgccgacggctatcaactgttgggcgaactcggtgcggtcgac
gacaccaaccagctcaccccgcttgggcgcgaactggcgcgtctgccgctcgatccccgc
gtgggccgcatgattctggcggcgcgcgaccagcagtcgctgcgcgaagtcctcatcatc
gcgagtgcgctggccgtgcaggatccgcgtgaccgccccctcgaagcgcaggacgccgcc
gacaacgcccatcgcaagtttgccgacgaacgctccgaattcctctcgtggctcaagatc
tggcagtggttcgaagaggcgatcgcgcacaagaagtcgaaccggctgctcggacaagcc
tgccgcgacaacttcctgtcgcaattgcgcctgcgcgaatggcgcgacgtgcatagccag
ttgctcaccgtcgtgcgcgaacagggatggcgcatcaacgcgtcggaggcgacttacgag
caggtgcatcttgccttgctcgcgggcctgctcggcaacatcggctgcaaggccgacgac
gatccgcatttcctcggcgcgcatggcatcaagttccacatctggccgggatcgtcgctc
gtgaagaaggccgggcgctgggtgatggccggcgaactcgtcgagacgagccggctctac
gcacgatgcatcgcccggatcgagccggagtggatcgaacgtgtcggcaagcacttggtg
aagacgtcgctctccgacgcgcattgggagaagaaggccgcgcaagtcgtggcgtacgaa
cgcggcatgctctatggcctgacgatctatgcgcgccgacggatgaacttcggcccgcgc
gatccgcgtcgcgcccgcgaaatcttcctgcgcagtgcgctcgtggaaggcgaatgggag
accaagctcccgttctacgcccacaatcgcaagctgatcgccgacatcgagcagctcgaa
cacaagtcgcgccgccaggacgtgcttgtcgacgacgaactgatctacgcgtattacgat
gcccatgtccccgccgatctctacgacggcgcgagcttcgagcactggtatcgcgaaacg
gccaagggctcgccgaagctgctctacctcgtgcgcgacgatctcatgcgtcacgaggca
gcgggcgtcacgaccgacttgttcccgaagaagacggccattgcgggcatcgacatggtg
ctcagctatcacttcgaaccgggctcgccgcgcgatggcgtaacgctcgccgtgccgctc
tacgcgctcaatcaggtcgacgcgcgccgctgcgaatggctggtgccgggcatgctcaaa
gagaaggcgcacctgctgatgaagtcgctgccgcagaagctgcggcgtcacttcgtaccg
ttgcccgagtttgcggccggcttcgtcgaccgggcgacgttcggacagggcgcgctgctc
gatgccctcatcgccgacgcgcgcgaacagaccggcgtcatgctcaagtccagtgacttc
aagttcgaaatgcttccggcgcacctgtcgatgaacttcaaggtgatcgacgaacacggg
cgtcaactcggcatgggacgcaatctcccgcaactgcgtgccgaactcggtcagcaggcg
cagcgcacatttcagcagttggcggcgaagagtggcgcgacgccgacccgtggttccgcc
gtcgagcccgacgcacatggtgcatcggcgacgacgtcgccggcggcgcgcggcgaggcg
cgtggtgcgggacgggcgggcacgcaggcagcgccttcagcggccgctgtcgagcccggc
cgctacgacaacctcacggcgtggagcttcggcgaactgcccgagatgctggaaatccgt
cgcggcggtcagacgttgttcggctacccggccttggtcgagcgcggcgatcactgcgat
ctcgaagtgttcgacgatccgcacgaagcgcaacggcagcatcgcgcgggtctgcgtcgg
ctcttcgcgattcaactgcgcgagcaggtgaagtatctggagaagaacatcccgggcctg
cagcagatggcgatgcagtacatgaacctggggacgcaagaagcactgcgggagcagatc
gtcgatctggcgctggagcgtgcgtgccttcagttgccttggccgagcgataacgcgtcg
ttcgtcgcgcgcaaggacgaggggcggggacgcctcacgctgctcgcgcaggagatcgcg
cggctggccggacagattctcaccgagtacgcgaccttgcagaagaagctggcccaggcc
aagccgttcgcgcaggcgtatgcggatctgacggcacagttgcaacggctgatcggcaag
cggttcctgatcgacacgccgtacgcgcaactggcgcatttcccgcgctatctgaaggcg
atggccggacgtatcgacaagctcaaggcggatccgacccgcgacgcccgcgccatgagc
gaactggggccgttgctgcagaactggcagcgggcgacgtcgcaacgccgcgatcagggc
gacgcgcgactcgaggagttccgctggctgctcgaggagttgcgcgtctcgctattcgcg
caggagttgcgcacgcccatgccggtgtcggtcaagcgtctgcacaaggtttgggaggcg
ttgcagcgctga
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