Pandoraea sp. XJJ-1: OYT13_12900
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Entry
OYT13_12900 CDS
T10414
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03030
DNA replication
panx03430
Mismatch repair
panx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OYT13_12900 (holB)
03430 Mismatch repair
OYT13_12900 (holB)
03440 Homologous recombination
OYT13_12900 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
panx03032
]
OYT13_12900 (holB)
03400 DNA repair and recombination proteins [BR:
panx03400
]
OYT13_12900 (holB)
Enzymes [BR:
panx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OYT13_12900 (holB)
DNA replication proteins [BR:
panx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OYT13_12900 (holB)
DNA repair and recombination proteins [BR:
panx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OYT13_12900 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
WAL80790
UniProt:
A0A9E9I990
LinkDB
All DBs
Position
complement(2842527..2843567)
Genome browser
AA seq
346 aa
AA seq
DB search
MLYPWQSQDWTRLNDLRAQMPHALLLQAVPGIGELALARTFAQALLCESPRADHLPCGTC
GACQWFSSGNHPDFRAVCPEILADSLPGADARADAEGDKKTKTPSKEIKIEQVREVIDFA
SLGSHRQGRRVVLLYPAEALNVHAANALLKTLEEPPEGVVFLLVTTQPDRLLPTILSRCR
RMVLTRPDHAQATQWLMGDAGLDAATAAAVLAETGGAPLAARALAEPDERAWRDWLIGQL
AQGAAIDGFACAEQLHKGNLPGILETLQRWCFDVLAQRMTGTVRFFPSHAQALRRCGDAT
DDVHLLGFLRELAQQRQVQNHPLNTRVLLEALFLQYQQLFGGPASR
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgctgtatccctggcagtcacaggactggacacgcctgaacgacctgcgcgcccagatg
ccgcacgcgctgctgttgcaggcggtgcccggcattggcgagctggcgctcgcccgcacg
ttcgcgcaggccctgctgtgcgaatcgccgcgcgccgaccacctgccatgcggcacgtgt
ggtgcgtgccagtggttctccagcggcaatcacccggattttcgtgccgtctgtcctgaa
atattggccgatagcctgcccggtgccgacgcccgtgccgacgccgagggcgacaagaaa
accaagacaccgagcaaggaaatcaagatcgagcaggtccgcgaagtgatcgacttcgcg
agcctgggttcgcaccgtcaggggcgacgcgtggtgcttctctatccggcggaggcgctc
aacgtgcatgcggcgaatgccctgctcaaaacgctcgaagagccgcccgagggcgtggtg
ttcctcctggtgacgacgcagccggaccgtctgctgccgacgattctgtcgcgttgccgc
cgcatggtgttgacccggcccgatcacgcgcaggcaacgcaatggttgatgggcgacgcg
ggactcgacgccgccaccgccgccgcggtactggccgagaccggcggggcgccgcttgcc
gcccgcgcactcgccgagccggacgagcgcgcctggcgcgactggctgatcggccagctc
gcgcagggcgccgcgatcgacggctttgcctgtgcggaacaactgcacaagggcaatttg
ccgggcattctggagacgctgcaacgctggtgcttcgatgtgctcgcgcagcgcatgacg
ggcaccgtacgcttcttcccgagtcatgcccaggcgttgcgccgttgcggcgacgcgacg
gacgacgtgcacctgctcggcttcctgcgtgagctggcgcagcagcgtcaggtgcaaaat
cacccgctcaatacccgcgtgctgctcgaggcccttttcctgcaataccaacagttgttc
ggtgggccggcgtcgcgttga
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