Pandoraea sp. XJJ-1: OYT13_13465
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Entry
OYT13_13465 CDS
T10414
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
panx Pandoraea sp. XJJ-1
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
panx03009
]
OYT13_13465 (rimO)
Enzymes [BR:
panx01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
OYT13_13465 (rimO)
Ribosome biogenesis [BR:
panx03009
]
Prokaryotic type
ribosomal protein modification factors
OYT13_13465 (rimO)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
YajR_YAM
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
WAL80888
UniProt:
A0A9E9D6G6
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All DBs
Position
complement(2974780..2976147)
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AA seq
455 aa
AA seq
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MSRPSPAGTPKVGFVSLGCPKALVDSEQILTQLRAEGYDIAGTYDGADLVVVNTCGFIDD
AVQESLDAIGEALAENGKVIVTGCLGAKKDAAGQDIVTAVHPKVLAVTGPHALGEVMSAV
HTHLPKPHDPFSDLVPPAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLDSRPVAEV
MLEAENLFKAGVKELLVISQDTSAYGVDVKYRTGFWAGRPLKTRMTELVTALGELAKQYG
AWVRLHYVYPYPHVDEIIPLMAEGHILPYLDVPLQHAHPDVLKRMKRPASGEKNLERIQA
WRKLCPDLTIRSTFIAGFPGETEAEFAYLLDFLREAELDRVGCFAYSPVEGAKANELPGA
LPDEVREERRARFMEVAEEISAQRQQRKVGTTIQVIVDEINQDGGVARSAADAPEIDGLV
YIEPTPTAAKRLKVGEFVNVTVTGADGHDLWGEVV
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcccatcgcccgccggcacccccaaggtcggcttcgtttcgctcggatgcccc
aaggcgctggtcgactccgagcaaatcctgacgcaactgcgtgccgaaggttacgacatc
gccggtacctatgacggtgccgatctcgtggtggtcaatacttgcggcttcatcgacgac
gccgttcaggaaagcctcgacgccatcggcgaggcgctggccgaaaacggtaaggtgatc
gtcaccggttgcctgggcgccaaaaaggatgccgccggtcaggacatcgtaacggccgtg
cacccgaaggtgctggccgtcaccggtccccacgccctgggcgaagtgatgagcgcggtg
catacgcatctgccgaagccgcacgaccccttctccgatcttgtgccgcccgccggcatc
aagcttacgccgcgtcattacgcgtatctgaagatctccgaaggctgcaaccatcgctgc
acgttctgcatcatcccgtcgatgcgcggcgatctcgattcgcgcccggtggccgaagtg
atgctcgaggccgagaaccttttcaaggccggtgtgaaggagctgttggtgatctcgcag
gacaccagcgcctatggtgtcgacgtgaagtaccgcaccggtttttgggcggggcgtccg
ctcaagactcgcatgaccgaactggtcacggcgctgggcgaactggccaagcagtacggc
gcctgggtgcggttgcattacgtctacccgtacccgcacgtcgacgagatcattccgctg
atggccgaaggccacatccttccgtatctcgacgtgccgctgcaacacgcccatccggat
gtgctcaagcgcatgaagcgcccggcctcgggggagaagaatctcgagcgcattcaggcg
tggcgcaagctgtgcccggatctgacgatccgcagcaccttcatcgcaggtttcccgggt
gaaaccgaggccgagttcgcgtatctgctggacttccttcgcgaggccgaactggaccgc
gtgggttgtttcgcctattcgccggtcgagggggccaaggccaacgaattgccgggtgcc
ttgccagacgaagtgcgcgaggagcgccgcgcgcgcttcatggaagtggccgaagagatc
tcggcgcagcgccagcagcgcaaggtcggcacgacgattcaggtcatcgtcgacgagatc
aatcaggacggtggggtggcgcgctcggcggccgacgcccccgaaatcgacggcctcgtg
tacatcgagcccacgcccacggcggccaagcgcctgaaggtcggcgagttcgtgaacgtg
acggtgactggcgccgacggccacgatctgtggggcgaggtggtctga
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