Pandoraea sp. XJJ-1: OYT13_14405
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Entry
OYT13_14405 CDS
T10414
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OYT13_14405 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panx03019
]
OYT13_14405 (pnp)
03016 Transfer RNA biogenesis [BR:
panx03016
]
OYT13_14405 (pnp)
Enzymes [BR:
panx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OYT13_14405 (pnp)
Messenger RNA biogenesis [BR:
panx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OYT13_14405 (pnp)
Transfer RNA biogenesis [BR:
panx03016
]
Prokaryotic type
tRNA degradation factors
OYT13_14405 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_KhpA-B
KH-I_KHDC4-BBP
DUF5813
Motif
Other DBs
NCBI-ProteinID:
WAL81060
LinkDB
All DBs
Position
complement(3149436..3151592)
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AA seq
718 aa
AA seq
DB search
MQMFNKVVKSFQWGQNTVRMETGEIARQASGAVLVDMDDTVVLATVVGAKSAKSGQDFFP
LTVDYLEKTYAAGKIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFYNEVQVVVQVV
SLNPEVPADIPALIGASAALSISGLPFNGPVGAARVAYVDGQYVLNPSREQIAQSKLDLV
VAGTEQAVLMVESEAKELPEDVMLGAVVFGHDQMQTAINAIHDLVRDAGKAEWDWAPAAK
NEALIAQVSALADASLRAAYQTREKQARTQQLRAVTSDVIAKLGEAASAKGEAAPDSIEV
GNILFDLEAKIVRSQILAGEPRIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVV
ATLGTKSDEQIIDALQGEYRDRFMLHYNFPPFSTGETGRVGSPKRREIGHGRLAKRALVA
CLPGADDFGYTVRVVSEITESNGSSSMASVCGGSLAMLDAGVPLTAPVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTSNGVTALQMDIKIQGITKEIMQVALAQAKEGRLHI
LDKMAQAQSGVRTELSEFAPRMVTIKINPEKIRDVIGKGGSVIRALTEETGTSIDISDDG
VVTIASPSAEGIAEAKRRIELITVEVEVGQVYDGTVLKLLEFGAIVSVLPGKDGLLHISE
IANERIKDINEYLKEGQAVRVKVIQQDDKGRLRLSHKALTDEEKQGSPALVKREGDAQ
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaatgttcaataaagtcgtcaagtctttccaatggggacaaaacacggttcgcatg
gagacgggtgagattgctcgccaggcatccggtgccgtgctcgtcgacatggacgatacg
gtcgtgctggccacggtcgtgggtgcgaagagcgccaagtcggggcaggatttcttcccg
ctgaccgtcgactatctggaaaagacttacgccgccggcaagatcccgggtggcttcttc
aagcgtgaaggccgtccgtcggaaaacgaaacgctgacgtcgcgcctgatcgaccgcccg
atccgcccgctcttcccggaaggcttctacaacgaagtccaggtggttgtgcaggtcgtt
tcgctgaacccggaagtgccggcggatatcccggccctgatcggcgcatcggcagcgctg
tcgatctccggtctgccgttcaacggcccggtaggcgctgcgcgcgtggcctacgtcgac
ggtcagtacgtgctgaatccgtcgcgtgagcagatcgcccagtcgaagctcgacctcgtc
gttgccggtacggagcaagccgtgctgatggtcgaatcggaagcgaaagagctgccggaa
gacgtgatgctgggcgccgtggtgttcggtcacgatcaaatgcaaacggcgatcaacgcc
attcacgatctggtgcgcgacgcaggcaaggccgagtgggattgggccccggccgcgaag
aatgaagcgctgatcgcacaggtgtcggcactggcggacgcctcgctgcgcgccgcttac
cagacgcgcgaaaagcaagcgcgtacgcaacaactgcgcgccgtgaccagcgacgtgatc
gccaagctgggcgaagcggcgagcgccaagggcgaagccgcgccggacagtatcgaagtg
ggcaacatcctgttcgatctggaagccaagatcgtgcgtagccagattctggctggcgag
ccgcgtatcgacggccgcgacacgcgcaccgtgcgcccgatctcgatccgcaccggcgtg
ctgccgcgtgcccacggttcggcgctgttcacgcgtggcgaaacgcaggccctcgtggtg
gccacgctcggcaccaagagcgacgagcagatcatcgacgcgctgcaaggcgagtaccgc
gatcgcttcatgctgcactacaacttcccgccgttctcgacgggtgaaacgggtcgcgtg
ggttcgcccaagcgccgcgaaatcggtcacggccgtctggccaagcgcgctttggtggcg
tgcctgccgggcgccgacgatttcggttacaccgtgcgtgtggtgtcggaaatcaccgaa
tcgaacggttcgtcgtcgatggcgtcggtgtgcggtggcagcctcgccatgctggacgcc
ggtgtgccgctgacggcgccggtcgccggtatcgcgatgggcctgatcctcgaaggcaac
aagtttgccgtgctgaccgatattctcggcgacgaagatcacctgggcgacatggacttc
aaggtggcgggtacgtcgaacggcgtcaccgcactgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgccctggcgcaagccaaggaaggccgtctgcatatt
ctcgacaagatggcgcaagcgcagtcgggcgtgcgtacggaactgtcggaattcgcgccg
cgcatggtcaccatcaagatcaacccggaaaagatccgtgacgtgatcggcaagggcggt
tcggtgatccgcgcactgacggaagaaaccggcacgagcatcgatatctcggacgacggc
gtggtgacgattgccagcccgagcgccgaaggcattgcggaagcgaagcgccgcatcgag
ctgatcaccgtggaagtcgaagtgggccaggtgtacgacggtaccgtgctgaagctgctc
gagttcggcgcgatcgtgtcggtgctgccgggtaaggatggtctgctgcacatctccgaa
atcgccaacgagcgtatcaaggacatcaacgagtacctcaaggaaggccaggcggtgcgc
gtgaaggtgatccagcaggacgacaagggtcgtctgcgtctgtcgcacaaggcgctgacg
gacgaagaaaagcagggtagcccggcgctggtcaagcgcgaaggcgacgctcagtaa
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