Pandoraea sp. XJJ-1: OYT13_14785
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Entry
OYT13_14785 CDS
T10414
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OYT13_14785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panx03019
]
OYT13_14785
Enzymes [BR:
panx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OYT13_14785
Messenger RNA biogenesis [BR:
panx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OYT13_14785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WAL81129
LinkDB
All DBs
Position
complement(3229483..3230820)
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AA seq
445 aa
AA seq
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MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAEAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQLLQSFIAYGKGLDLRFLAAYGGVSLNPQMMK
LRKGVDVLVATPGRLLDLNRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPAQR
QTLLFSATFTDDIRAMAASVLRGPINISVSPPNATASKIKQWVVTVDKKNKPDLFMHLVA
ENHWDHALVFVKTRNGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVQMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEAPGFEAEHRVPQTSATGQIIKKPKKPKKPKVPLAAPVTVQALSKKPRTK
PAGKPATGSRKPTGKLAGGRGKRRS
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgcctcgcttggcctgatcgatccgttgctgcgtaacgtgcaggatctcaat
taccagacgcctacaccggtgcaggccaaggcgattcctgccgtgctcagtggcaaggac
gtcatggctgaggcacagaccggcactggcaaaacggcgggctttgcgctgccgctgttg
caacgactggtgcagcacggcccggcggtgtcgagcaaccgtgcgcgcgttcttgttctg
gtgcccacgcgtgaattggctgaacaactgctgcaaagctttatcgcttacggcaaaggc
ctcgatctgcgatttctggctgcctacggtggagtgagtctcaacccgcagatgatgaag
ttgcgcaaaggcgtggatgtgctcgtcgccacgccgggtcgtttgctggatctcaatcgc
cagaatgcagtgcagtttgatcaagtgcaaacgctcgtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgaactcaatgccgtctttgctgccttgcccgctcagcgc
cagaccctgctcttctccgccacgtttaccgatgacatccgcgccatggcggcgagcgtt
ctgcgcggtccgatcaatatcagcgtcagcccgcccaacgccacggccagcaagatcaag
cagtgggtggtgacggtggataaaaagaacaagccggacctgttcatgcaccttgtggcc
gagaaccactgggatcacgcgctggtgttcgtcaaaacccgcaatggcgtcgattacctg
gcggccatgctggatgaagcgggctatgcggtcgacaccatccacggagacaaaccccaa
cccgcgcgcttgcgtgcgctggagcgcttcaagacgggcgaagtccagatgctggtcgcg
accgatgtggctgcgcgcggactggatatcgacgatttgccgctggtgatcaatgtcgat
ctgccgatcgttgcgcaagactacgtgcatcgtatcggccgtaccggccgcgcgggcgcc
agcggcgtggcggtgtccctcgtatgtgccgacgaagcgccgcaattggccgcgattgaa
gcactgatccggcaaaccctgcgccgtgaagaagcgccgggttttgaagccgaacaccgt
gtgccgcaaaccagcgcgacgggccagatcatcaagaaacctaaaaagcccaagaagccc
aaagtgccgttggctgcgccggttacggtgcaggcgctcagcaaaaagccgcgcaccaaa
cccgccggcaaacccgctacgggttcgcgcaaacccaccggaaaactcgcgggtggtcgc
ggcaaacgccggtcctga
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