Pandoraea sp. XJJ-1: OYT13_15570
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Entry
OYT13_15570 CDS
T10414
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OYT13_15570 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panx03021
]
OYT13_15570 (rpoD)
Transcription machinery [BR:
panx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OYT13_15570 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
WAL85297
LinkDB
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Position
complement(3401600..3404221)
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AA seq
873 aa
AA seq
DB search
MTTTSGKKTVIPAPKAKRATSAAAASGGRGASRSAKAGVAVKADAVGRATKKTASQASSA
KRTTQVKAAAGASKTTGKTAAKVTDVTKRKSATAATVGAAKAARPTVKSEAPVRATKAET
TVKATAGGKPQARQPAEKSAKSATTAKASTLAGRSKPATQAPRKTGASSKPEAVEVVSAA
SEPLVPRTRGKAAKTAASVAQSVAADTSDQPVNEDQTKVEKQKARDRRAKEKALLKDAFS
SHQPGTAEELEERRGKLRALIKLGKERGFLTFAEINDHLPDDVVEGDALEGVIATFNDMG
VAVYEQAPDAETLLLNDNAPNAATDDEVEEQAEAALSTVDSEFGRTTDPVRMYMREMGTV
ELLTREGEIEIAKRIEEGLKHMVQAISACPTTIAEILAMAEKVEREEMRIDEVVDGLIDP
NAEAVAAAAAAAAEDEDFDADAEAEEEEAEEAADEDDDSSGGGASAAQVEQLKRDALAKF
AEIADWFGKMRRAFEKEGYQSKSYVKAGESIQAELMTIRFTARTVERLCDTLRSQVDEVR
NIERAILNIVVDKCGMPRADFVSRFPGNETNLDWIYTVVADNKAYSSVVERNVPAVRELQ
QKLIDLQARVVLPLTELKDVNRKMSEGERRARKAKREMTEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
KMNRISRQILQETGVEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGD
FIEDTGTVAPADAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFD
VTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgaccagcggaaaaaagacggttatccctgcaccgaaggcaaagcgcgcgacc
agcgcggcggcggcatccggtgggaggggggcgtctcgttctgcaaaagctggcgttgcc
gtgaaagccgatgcggtgggtcgagctacgaagaaaacggccagccaggcaagttcggcg
aaacgtaccacgcaagtaaaggcagccgccggcgcatcgaagacgaccggcaagacggct
gcgaaggtgaccgatgtcaccaagcgcaagagtgcgaccgccgctacggtgggggctgcg
aaggcagccaggccgacggtgaagtccgaggcgcccgtcagggcgacgaaggcggaaacg
accgtgaaggcgacggccggtgggaaaccgcaggcccgacaacccgctgaaaaaagcgcc
aagagcgcaactaccgccaaggcatcgaccctggcgggccgcagtaaacctgcgacgcaa
gccccacgcaagacaggggcttccagcaaacccgaggctgtggaggtcgtgtcggcagca
agcgagccgctcgtccccaggacgcgcggcaaggccgcgaagaccgccgcctcggtggcg
cagagcgtcgcagcggatactagtgatcaacccgtgaacgaagatcagaccaaagtggaa
aagcagaaggcgcgtgatcgccgggcaaaagagaaagcactgctcaaggacgcattttcc
tcgcaccagcccggtacggccgaggaacttgaggaacgtcgtggcaagctgcgggcactg
atcaagctgggtaaggaacgaggtttcctgacctttgcagagatcaacgaccacctgccc
gacgacgtggtggagggcgacgcgctggaaggcgtgatcgctacgtttaacgacatgggc
gttgccgtgtacgagcaggcacccgatgccgaaacgctgttgctcaacgacaatgcgccg
aacgccgcaacggacgacgaagtcgaggagcaagcggaagcggccctgtcgacggtcgac
tccgagtttggccgcacgaccgatccggtgcgtatgtacatgcgcgagatgggcacggtc
gagttgctgacgcgcgagggcgaaatcgagatcgccaagcggatcgaggaaggcctgaag
cacatggtgcaggcgatttccgcgtgcccgacgacgattgccgaaattctggcgatggcc
gagaaggtcgagcgtgaagaaatgcgcatcgacgaggtggtcgacggcctgatcgatccg
aatgccgaggcggttgcggcagcggcggcagcggctgcggaagacgaagacttcgacgcc
gacgcggaagcggaagaggaagaagcagaagaagcggctgacgaggacgacgacagcagc
ggcggcggggcttcggccgcgcaggtcgagcagctcaagcgtgacgcgttggccaagttc
gccgagatcgccgactggtttggcaagatgcgtcgtgcgttcgagaaggaaggctaccag
tcgaagtcgtacgtgaaggcgggtgagtcgatccaggcggaactgatgacgatccgcttc
acggcgcgcacggttgagcgtctgtgcgacacgttgcgttcgcaagtcgatgaagtgcgc
aacatcgagcgagcgatcctgaatatcgtggtcgacaagtgcggcatgccgcgtgcggat
ttcgtgtcgcgtttcccgggcaacgaaaccaatctcgactggatctacacggtcgtggcg
gacaacaaggcgtacagctcggtggttgagcgtaacgtcccggcggtgcgtgaattgcag
cagaaactgatcgacttgcaggcgcgcgtggtgttgccgcttaccgagttgaaggacgtc
aatcgcaagatgtcggaaggcgagcgccgtgcacgcaaggccaagcgcgagatgaccgaa
gcgaacttgcgtctggtgatttcgattgcgaagaagtacacgaaccgtggcctgcagttc
ctggatctgattcaggaaggcaacattggcctgatgaaggcggtggacaagttcgaatac
cgtcgtggttacaagttctcgacgtacgcgacgtggtggattcgtcaggccatcacgcgt
tcgatcgcggaccaggcacgtaccatccgtattccggtgcacatgatcgagacgatcaac
aagatgaaccggatttcgcgtcagattctgcaggagaccggtgtcgagccggatccggcg
acgctggccgagaagatggagatgccggaggacaagatccgcaagatcatgaagatcgcg
aaggagccgatctccatggaaacgccgatcggtgacgacgacgattcgcatctgggcgat
ttcatcgaagatacgggcacggtagcccctgcggacgccgcgttgcatggtagtatgcgc
gacgtcgtgaaggacgtgcttgattcgctgacgccgcgcgaggccaaggtgttgcgcatg
cgttttggcattgagatgagcacggaccatacgctcgaggaagtgggcaagcaatttgac
gtgacgcgtgagcgtattcgtcagattgaggccaaggcgctgcgcaagctgcgtcacccg
agccgttccgacaagctcaagtcgttcctcgaaggcaattga
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