Pandoraea sp. XJJ-1: OYT13_19010
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Entry
OYT13_19010 CDS
T10414
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx00521
Streptomycin biosynthesis
panx00523
Polyketide sugar unit biosynthesis
panx00525
Acarbose and validamycin biosynthesis
panx00541
Biosynthesis of various nucleotide sugars
panx01100
Metabolic pathways
panx01110
Biosynthesis of secondary metabolites
panx01250
Biosynthesis of nucleotide sugars
Module
panx_M00793
dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
OYT13_19010 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
OYT13_19010 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
OYT13_19010 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
OYT13_19010 (rfbB)
00525 Acarbose and validamycin biosynthesis
OYT13_19010 (rfbB)
Enzymes [BR:
panx01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
OYT13_19010 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
WAL81892
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All DBs
Position
complement(4117489..4118553)
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AA seq
354 aa
AA seq
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MIFVTGGAGFIGANFVLDWLVQHDEPVLTIDKLTYAGNLANLAGIEHDRRHRFAQVDICD
RDALGRLYAAHRPRAVLHFAAESHVDRSIHGPGDFVQTNIVGTFTMLEAARAYWGTLDGE
ARDAFRFLHVSTDEVYGSLSPSDPAFTETTPYAPNSPYSASKAGSDHLVRAYHHTYGLPV
LTTNCSNNYGPYQFPEKLIPLVIANALAGKPLPIYGDGSNVRDWLYVGDHCSAIREVLAR
GVTGEVYNVGGWNEQNNLSVVKHLCALLDELSPRTDGKSYGDQITFVTDRPGHDRRYAID
ARKLERELGWRPAETFETGMRKTVQWYLANGEWVRQVQSGEYQRWIETHYQKND
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatctttgtgactggcggtgccgggtttatcggcgcaaatttcgttcttgactggctc
gtgcagcatgatgagcctgtgttgactatcgataagctgacttacgcgggcaacctcgcc
aatcttgcgggtatcgagcatgaccggcggcatcgctttgcccaagtcgatatctgcgac
cgcgacgccctcggtcggctgtacgccgcgcatcggccgcgcgcggtgctgcacttcgcg
gcggagagccacgtcgaccgttccatccacggcccaggtgacttcgtgcagacgaacatc
gtcggcacgttcacgatgctcgaagccgcacgcgcctattggggaacgctcgacggcgag
gcgcgcgatgccttccgcttcctgcacgtctcgacggacgaagtctatggctcactgagc
ccgagcgatccggccttcaccgagaccacgccgtacgcccccaacagcccgtactcggcg
tcgaaggccggttccgaccatctggtgcgtgcctatcaccacacctatggcctgccggtg
ctcacgaccaactgctcgaacaactacggcccgtaccaattccccgaaaagcttatcccg
ctggtgatcgccaatgcgctggccggcaagccgttgccgatctatggcgacggcagcaac
gtgcgcgactggctgtatgtcggcgaccattgctccgccattcgcgaggtgctcgccaga
ggcgtcacgggcgaggtgtacaacgtgggcggctggaacgagcagaacaacctgtcggtc
gtgaagcacctgtgtgcactgctcgatgaactgtcgccgcgcaccgacggcaaatcgtac
ggcgatcagatcacgttcgtcaccgaccggccgggccacgaccgccgctatgccatcgac
gcgcgcaagctcgagcgcgaactgggctggcgcccggccgagacgttcgagaccggcatg
cgcaagacggtacagtggtacctcgccaacggggagtgggtgcgccaggtgcagtcaggc
gaataccagcgctggatcgaaacgcactatcaaaagaacgactga
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