Pandoraea sp. XJJ-1: OYT13_19040
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Entry
OYT13_19040 CDS
T10414
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03030
DNA replication
panx03430
Mismatch repair
panx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OYT13_19040 (dnaE)
03430 Mismatch repair
OYT13_19040 (dnaE)
03440 Homologous recombination
OYT13_19040 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
panx03032
]
OYT13_19040 (dnaE)
03400 DNA repair and recombination proteins [BR:
panx03400
]
OYT13_19040 (dnaE)
Enzymes [BR:
panx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OYT13_19040 (dnaE)
DNA replication proteins [BR:
panx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OYT13_19040 (dnaE)
DNA repair and recombination proteins [BR:
panx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OYT13_19040 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WAL85338
LinkDB
All DBs
Position
complement(4124748..4128341)
Genome browser
AA seq
1197 aa
AA seq
DB search
MRPMSEPRFVHLRLHSEYSIADGIVRLDDVVKAAAKDGQGALALTDLANMFGAIRFYKEA
RGKGVKPIIGCDAWITNPVDRDKPSRLLLLARDREGYLNLCQLLSKAWLGNQWRGRAEIE
SSWLQADGLARGLLALSGAQMGDVGAALAAGNPEQALQCAQHWASVFPGAFYIELQRTGQ
AGMEMYVQQAVQLAAKAGLPVVATHPIQFMTSDDFTAHEARVCISEGEMLGNARRVRRFT
QDQSFRTQDDMIAAFEDVPSAVANTVEIAKRCNVTLELGKPKLPLFPTPDGMSLDDYLVH
LSKEGLETRLAQLFPDEAERDAQRPEYYKRLDFETGTIIKMGFPGYFLIVADFIQWAKNN
GVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQDGRDRV
IQYVKDKYGADAVSQIATFGSMAAKAAVRDVGRVLDLGYNFVDGISKLIPFKPGKHVTID
DALKEEPQLAERFQTEDEVKQLIELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQG
SGEDASGVVSQYDKDDVEAVGLVKFDFLGLTTLTILNWAERYIKRLHPEMADWSLDQVSL
TDPAAFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLQETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAE
EMAQHREIFAQGAAANGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYEDCLTSANGLGVLPPDVNVSAYRFEPADAKTVRYGLG
AIKGSGQSAIEEILRAREGKPFTDLFDFCARIDRRVVNRRTIEALIRAGAFDSIHANRAQ
LMASVPLAMEAAEQASAAANQVSLFDLGDESLQAPLELADEPAWTDKRKLQEEKQALGFY
LSGHMFDSYAEEVRRFVRTRIRDLTEGRDRLVAGVIASMRTMMTQRGKMLIVQLDDGTAT
LEVTIFNEQFEANKHLFKEDELLIVQGNARPDSFTGGLRFTVESLMDLGRARARFARALK
LSFNGNADWTRLRATLQPHCTMYRVAAMAGAGGGSRGGGGGFNGGGGGGGGGRSGAFGRR
NDDDNDKQNGLPVHIVYRRPDAECESRLGDDWKVQPGDELLGELRQWLTTDSVQIIY
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atacggcccatgtcagaacctcgcttcgtccacctccgtctccattccgaatactcgatc
gccgatggcatcgtgcggctcgacgacgtcgtcaaggccgccgccaaggatggtcagggc
gcgctcgcgctgaccgacctcgcgaacatgttcggcgccatccgtttttacaaggaagcc
cgcggcaagggcgtcaagccgatcattggctgcgatgcctggatcacgaatccggtcgac
cgcgacaagccgtcgcggctgttgctgctcgcacgcgacagagagggctatctgaacctg
tgccagttgctctccaaggcgtggctcggcaaccagtggcgcgggcgggcggagatcgaa
tcgtcatggctccaggccgacggtctggcgcgcggtctgctggcactctccggggcccag
atgggcgatgtcggtgcggcgctggcggccggcaaccccgagcaggcgctgcaatgcgcg
cagcactgggcgagcgttttccccggggcgttttatatcgagttgcagcgcaccggccag
gcgggcatggagatgtacgtgcagcaggcggtgcagctggcggcgaaagcgggcctgccg
gtcgttgccacgcatccgattcagttcatgacgtcggacgacttcaccgcgcacgaggcg
cgcgtgtgtatttccgaaggcgagatgctgggcaacgcgcgccgtgtgcggcggttcacg
caggatcagagtttccgcacgcaggacgacatgatcgccgcgtttgaagacgtgccctct
gcagtggcgaataccgtcgagattgccaagcgctgcaacgtgacactcgagctcggcaag
ccgaagctgccgctgttccccacgccggacggcatgtcgctcgacgactatctcgtgcac
ctgtccaaggaagggctggagacgcgtctcgcccaactgttccccgacgaggccgagcgc
gacgcgcagcgtcccgagtattacaagcggctcgacttcgagaccggcacgatcatcaag
atgggcttccccggctacttcctgatcgtggcggactttatccagtgggcgaagaacaat
ggtgtcccggtagggccggggcgcgggtcgggggcgggttcgctcgtggcttatgcgctg
ggcatcaccgacctcgacccgctcaagtacaacctgctgttcgagcgcttcctgaatccg
gaacgcgtttcgatgcccgacttcgacatcgacttctgtcaggacgggcgcgatcgcgtc
attcagtatgtgaaggacaaatacggcgccgacgccgtctcgcagatcgcaacgttcggc
tcgatggccgcgaaggcggcggtgcgcgacgttggccgcgtgctcgatctgggctacaac
ttcgtcgacggtatctccaagctgattccgttcaagccgggcaagcacgtcaccatcgac
gacgcgctcaaagaagagccgcaacttgccgagcgcttccagaccgaggacgaagtcaag
cagttgatcgagctggcgcagcgcgttgaaggcctcacgcgtaacgtcggcatgcacgcg
ggcggcgtgttgatcgcaccgggcaagctgacggatttctgtcccctgtacacgcagggc
agcggcgaagatgccagcggcgtggtgagccagtacgacaaggacgacgtggaagccgtc
ggcttggtgaagttcgactttttgggtctgaccacgctgacgatcctgaattgggccgag
cgctacatcaagcggctgcatccggagatggcggactggtcgctcgaccaggtttcgctc
acagatccggccgccttcagcatcctgaagaaagccaatacggtggcggtgttccagctg
gaaagccgcggcatgcagggcatgttgaaggacgcccagccggaccggttcgaggacatt
atcgcgctggtggcgttgtatcgtccgggcccgatggacctgatcccgagcttctgcgcc
cgtaagcacggccgcgagaaggtagagtacccggacccgcgcgtcgagccggtgctccag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggc
ggctactcgctaggtggcgccgatttgttgcgtcgcgcgatgggcaagaagaaggctgag
gagatggctcagcaccgcgagattttcgcgcagggtgcggcggcgaacggcctcacacgc
gaaaagtcggacgagatcttcgacttgatggagaaattcgcgggctacggtttcaacaag
tcgcacgccgcggcgtacgcactgctggcctattacaccgcgtggctgaaagcacaccat
cccgccgaattcatggccgccaatatgagcttggccatggacgacacggacaaggtcaag
attctctacgaagactgcctgaccagcgccaatggcctgggcgtgctgcccccggatgtg
aacgtctccgcctatcgattcgagccggccgacgcgaagacggtgcgttacggcctgggc
gcgatcaaggggagcggtcagtcggccatcgaggaaattctgcgggcgcgcgaagggaaa
ccgttcaccgatctgtttgacttctgcgcccgcatcgatcgtcgtgtggtgaaccgtcgc
acgatcgaagcgctcattcgtgccggtgccttcgacagcattcatgccaatcgtgcgcag
ttgatggcgtcggtgccgttggcgatggaagccgcggagcaggcgagtgcggcggccaat
caggtcagcctgttcgatcttggtgacgaaagcctgcaggcgccgctcgagctggccgac
gagccggcctggaccgacaagcgcaagttgcaggaagagaagcaggcgctcggcttctat
ctgtcgggccacatgttcgattcctacgccgaggaagtgcggcgcttcgtccggacccgc
attcgagacctgacagagggccgcgacaggctggtcgccggcgtgattgccagcatgcgc
acgatgatgacccagcgcggcaagatgctgatcgtacagctcgacgacggcacggcaacg
ctcgaagtcacgatcttcaacgagcagttcgaagcgaacaagcacctcttcaaggaagac
gaactactcatcgtgcagggcaacgcacgcccggacagcttcaccggcggcctgcgcttc
accgtggagagcttgatggatctcggccgtgcgcgggcgcgtttcgcgcgtgcgctcaag
ttgtcgttcaacggcaatgccgattggacgcgcctgcgcgccacgctgcaaccgcactgc
acgatgtaccgcgtcgcggcaatggcaggcgcgggcggcggttcccgtgggggcggcggc
ggcttcaacggcggcggaggcggcggtggcggtggccggagcggtgccttcggacgtcgc
aatgacgacgacaacgacaagcagaacggcttgccggtgcacatcgtgtatcgccgtcct
gatgccgaatgcgagtcgcgactgggtgacgactggaaggtccagccgggcgacgaattg
ctcggcgagcttcgccagtggctcacgaccgattcggtgcaaatcatctattga
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