Pandoraea sp. XJJ-1: OYT13_19705
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Entry
OYT13_19705 CDS
T10414
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OYT13_19705 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panx03019
]
OYT13_19705 (pcnB)
Enzymes [BR:
panx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
OYT13_19705 (pcnB)
Messenger RNA biogenesis [BR:
panx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OYT13_19705 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
WAL82016
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All DBs
Position
4279077..4280591
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AA seq
504 aa
AA seq
DB search
MIRKLIKKLLGKDSQAILPATGKPVVIPASVHRIDPSLLSKNAVRVTDTLQQAGFKAFIV
GGAVRDLLLGIAPKDFDVATSATPEQVQRLFRRARIIGRRFQIVHVQFGQEIIETSTFRA
LVDAVDSEQIGARRPKKGELDRKTHVTDESGRVLRDNVWGEQEEDAARRDFTVNAMYYDP
AAQTVHDYHHGWEDIQKRVLRMIGDPATRYREDPVRMLRVVRFAAKLGFKIDDATAEPIT
QLAPLIDNVPAARLFDEMLKLLLSGHAWACVQQLREQGLHHGLLPLLDVVLEQPLGEKFV
MLALANTDARIRAGKPVSPGFLFAALLWHLVLEKWQAYQSAGEYPIPALHLAMDDVLDAQ
TGKLAIQRRFVADMKDIWGLQVRLDKRVGRTPLRMLEHPRLRAGYDFLLLRCESGEVPAE
AGQWWTDFLEGDAATRDTLLSQGSGPGSTPAAKRRRRRRKPTGGSSGESSGGERGDGGGG
NESATSENQGKRVSSRQHGSEGAS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgcaaactcatcaagaaactgcttggcaaagacagccaggccatcctgcccgcg
accggcaagccggttgtcatccccgcctcggtccaccgcatcgatccgagcctgctctcg
aagaacgccgtgcgcgtgaccgacacgctgcagcaagccgggttcaaggccttcatcgtc
ggcggcgccgtgcgcgatctgctgctgggcattgccccgaaagacttcgacgtcgccacc
agcgccacgcccgagcaggtccagcgcctgttccgccgcgcgcgcatcatcggtcgccgc
ttccagatcgtgcacgtgcagttcggccaggagatcatcgagacctccacgttccgggcg
ctggtcgatgccgtcgacagcgagcagatcggcgcacgtcgtccgaaaaaaggcgaactc
gaccgcaagacgcacgtcaccgacgaatcgggccgcgtgctgcgcgacaacgtctggggc
gagcaggaggaagacgctgcccggcgcgacttcaccgtcaacgccatgtattacgatccg
gcggcccagacggtgcacgactatcaccacggctgggaagacattcagaagcgcgtgctg
cgcatgatcggcgacccggccacgcgctaccgcgaagaccccgtgcgcatgctgcgcgtg
gtgcgtttcgcggccaagctcggcttcaagatcgacgacgcgacggccgagccgattaca
cagctcgcgccactcatcgacaacgtgccagcggcgcgtctgttcgacgagatgctcaag
ctgctgctctcgggtcacgcgtgggcgtgtgtgcagcaactgcgtgagcagggcctgcat
cacggcctgctgccgttgctcgacgtggtactggagcagccgttgggcgagaaattcgtc
atgctggcgctcgccaacaccgatgcacgcatccgcgcaggcaagccggtctcgccgggc
ttcctgttcgccgcgctgctctggcatctcgtgctcgaaaagtggcaggcctatcaaagt
gcgggcgaatatccgattccggcgctgcatctcgcgatggacgacgtgctcgacgcgcaa
accggcaagctggcgatccagcggcgtttcgtcgccgacatgaaggatatctggggcttg
caggtgcgcctggacaaacgcgttggccgcacgccgctgcgcatgctcgagcatccgcgt
ctgcgcgcgggttacgatttcctgctgctgcgttgcgaatccggtgaagtcccggccgaa
gccggccagtggtggaccgacttcctcgaaggcgacgccgcgacacgcgacaccctgctt
tcccaaggcagcggaccgggctccacgccggccgccaagcgtcgccgccgacgtcgcaaa
ccgacgggcggaagcagtggcgaaagctcgggcggcgaacgtggcgacgggggcggcggc
aacgagagcgcgaccagcgagaatcagggcaagcgggtatcatcgcgacagcatggttcc
gaaggtgcttcatga
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