Pandoraea sp. XJJ-1: OYT13_20845
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Entry
OYT13_20845 CDS
T10414
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03018
RNA degradation
Brite
Enzymes [BR:
panx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OYT13_20845
Messenger RNA biogenesis [BR:
panx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OYT13_20845
Ribosome biogenesis [BR:
panx03009
]
Prokaryotic type
rRNA processing factors
OYT13_20845
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WAL82216
UniProt:
A0A9E9D9P2
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Position
4515063..4518287
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEGRHGFLPFKEVARAYFREGADVRNARIQDALSEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMGQLELPEGMSIIARTAGIGRSAEELQ
WDLNYLLQLWRAVEGAATNIELPRDSALIYLESSLVIRAIRDYFQPDIGEILIDTEEISE
QARNFMQVVMPDHLNRVKQYRDDVPLFSRFQIEHQIETAYARQVPLPSGGAIVIDHTEAL
VSIDVNSARATKGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREV
EQRVKDSLKHDRARVQMGKISRFGLMELSRQRLRPSLSEGTHVTCPRCNGTGHIRDAESS
ALQVLRIIQEEAMKEHTAAIHCQVPVEVSAFLLNEKRQEINKIEARFKVGVLLIPNKHLE
TPHYKLERLRFDDPRLDTPRASYVLAEEAARALEEDPAAYSKKKEDVRPRQEAAVKGITP
EQPAPAAQPRPAPVAATVPAPAAPARSGGFIGFVKRLLGLEPAAPAPVQVEEPAKPNVRP
PRERHERPHQQNRNRRGNARDDSKSGKDNAGQPAREGREGREGREGREGRAARPERAERS
ERGDRNERQEGRDKRERDEAQPRQPAQDVRAEEGREPREGRERGNRRDRNERRDRRQPEG
EDGQQATPQRIAQAAPLVAEQEDLEQDRLTAQVEGAALLAGEEGEQGGEERRRSRRRGRR
GGRREREANEQQLHGEGEQAEGATSTGEEGVHAPVLTHEAVDTTAIDVPARAAAPVIAAE
TVTAADVPTVQVGSTPAPVHVEPAEVPVARVTEAAPFALPEVSSPVIAEPIAPVNVAPLP
AVEVAAPVVPPVSAPLPAATPIPAQPAVPAEALTEIAATAAIASTPADVSPAPTAPAAPS
TPVEMVETAKPVQTPAPTAPTAAVATVAATEVATTRAAPAAVAPALESTELESSLASVGL
VWVHTDADKHRAAKEAAAQAAPAPHVPRERRPSTPASSGPMEQVETRGSSDHVA
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagcaggaagaactgcgcgtggcaattgtcgat
gggcagaaactcatcgatatcgatatcgagacggccggccgcgaacagcgcaaaggcaat
atctacaagggtattattacccgtatcgaaccctccctcgaagcctgcttcgtcaactac
ggcgaaggccgtcacggcttcctgccgttcaaggaagtcgcccgcgcgtacttccgcgaa
ggtgccgatgtgcgcaatgcgcgcatccaggacgccctctccgaaggccaggaactcatc
gttcaggtcgaaaaggaagaacgcggcaacaagggcgccgccctcacgaccttcatctcg
ctggccggccgctacctcgtgctgatgccgaacaacccgcgtggcggtggcgtgtcgcgc
cgcatcgagggcgaagaccgtcaggaactgcgcgagacgatgggtcagctcgaactgccg
gaaggcatgagcatcatcgcccgcaccgcaggcatcggccgctcggccgaagagctgcag
tgggacttgaactacctgctgcaactctggcgcgccgtcgaaggcgccgccaccaacatc
gaactgccgcgcgactcggcgctgatctatctcgagtcgagcctcgtcattcgcgccatc
cgcgattatttccaacccgatatcggtgaaatcctcatcgatacggaagaaatctccgag
caagcgcgtaacttcatgcaggtggtcatgcccgatcacctcaatcgcgtgaagcaatat
cgcgacgacgtgccgctgttctcgcgtttccagatcgagcatcagatcgaaacggcgtac
gcacgccaagtgccgctgccttcgggcggcgcgatcgtgatcgatcacaccgaagcgctc
gtgtcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggcg
cttcgcaccaacctggaagcggccgatgaagtggcgcgccagctgcgtctgcgcgacctg
ggcggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgtgaagtc
gaacaacgtgtgaaggactcgctcaagcacgatcgcgcacgcgtccagatgggcaagatc
tcgcgtttcggcttgatggaactgtcgcgccagcgtctgcgtccgtcgctgtcggaaggc
acgcacgtgacctgcccgcgctgcaatggcaccggccacatccgcgacgctgaatcgtcg
gccctgcaagtcctgcgcatcatccaggaagaggcgatgaaggagcacacggcagccatc
cactgccaggtgccggtcgaagtctccgcgttcctgctcaacgaaaagcgccaggaaatc
aacaagatcgaggcacgcttcaaggtcggcgtgctgctgatcccgaacaagcatctcgaa
acgccgcactacaagctcgagcgcctgcgtttcgacgatccgcgtctggataccccgagg
gccagctacgtcctcgccgaagaggcagcgcgtgccctggaagaggatccggcggcttac
agcaagaagaaggaagacgtgcgcccgcgccaggaagccgccgtcaagggcattacgcct
gaacagccggcaccggccgcgcaaccgcgtcctgcccccgtcgccgcgaccgtgcccgcg
cccgcagcccccgcacgcagcggtggcttcatcggcttcgtgaagcgcctgctgggtctc
gagcctgcggccccggcaccggttcaggtcgaagaaccggccaagcctaacgttcgtccg
ccgcgcgagcgccacgaacgtccgcatcagcaaaaccgcaaccgtcgtggcaatgctcgc
gacgacagcaagtccggcaaggacaacgccggccaaccggcgcgtgaaggtcgtgagggc
cgtgaaggccgcgaaggccgtgagggtcgcgccgcccgtccggaacgtgccgagcgcagc
gaacgcggtgatcgcaacgagcgtcaggaaggccgtgacaagcgtgagcgcgacgaagcg
cagccgcgtcagccggctcaggacgtgcgtgccgaggaaggtcgcgagccgcgcgaaggt
cgcgaacgcggcaatcgtcgcgaccgcaacgagcgtcgtgatcgtcgtcagcccgaaggg
gaagacggccagcaagccacgccgcaacgcatcgcccaagccgccccgctcgtcgcagag
caggaagatctcgaacaggatcgtctgacggcgcaggtcgaaggcgcagcgcttctcgcg
ggcgaggaaggcgagcaagggggtgaagagcgccgccgcagccgtcgtcgcggtcgccgc
ggtggccgtcgcgagcgtgaggccaatgagcagcaactccatggcgaaggcgagcaggcc
gaaggcgcaacatcgaccggcgaggaaggtgtgcacgccccggtgttgacgcacgaagcc
gtcgacaccaccgcgatcgatgtcccggctcgtgctgcagcgcccgtcattgcggcagag
actgtcacggcggccgatgtgccgacggtgcaggtcggatcgacgcccgccccggttcac
gtcgagccggcggaagtccccgtggcacgcgtgaccgaagccgcgccgttcgcgctgccg
gaagtctcgtcgccggtcatcgccgaaccgatcgccccggtcaacgtggcaccgctgcct
gcagtggaagtcgccgcaccggtggtcccgccggtcagcgcgccgttgcctgccgccacg
ccgatcccggcgcagcctgccgtcccggccgaggccctgaccgagatcgccgccacggca
gccattgccagcaccccggcagacgtcagccccgcgccgacggcacccgccgcaccgtcg
acgccggtggagatggtcgaaacggcgaagccggtgcaaacgccggcaccgaccgcaccg
accgcagcggtagccaccgttgccgcgacggaagtcgcgacgactcgggcggccccggcc
gccgtagcgcccgcgctggaaagcaccgagctggagtcgtcgctcgcaagtgtgggtctg
gtctgggtccacacagacgccgacaagcaccgcgccgccaaggaggccgcagcgcaagct
gcaccggcaccgcatgtgccgcgcgagcgccgtccgtccacgccggccagcagtggcccg
atggagcaagtggaaacgcgcggctcgtcggatcacgtggcctaa
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