Pandoraea sp. XJJ-1: OYT13_23310
Help
Entry
OYT13_23310 CDS
T10414
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OYT13_23310 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panx03021
]
OYT13_23310 (rpoC)
03400 DNA repair and recombination proteins [BR:
panx03400
]
OYT13_23310 (rpoC)
Enzymes [BR:
panx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OYT13_23310 (rpoC)
Transcription machinery [BR:
panx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OYT13_23310 (rpoC)
DNA repair and recombination proteins [BR:
panx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OYT13_23310 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
ApbA_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
WAL82650
LinkDB
All DBs
Position
complement(5029973..5034184)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVQQVEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVLEPGMTPLKRCQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSIDIDQQVEHLRAELQATGSEAKIKKYAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVLGVATTIKAAKKEVENQTAVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRDKINGRGEGLSFIDVSEVLRAYDNK
EVELASRVNVRITEYTVDPETGEKTPKITLYPTTVGRAILSEILPPGLPFSVLNKSLKKK
EISKLINTAFRRCGLRETVIFVDKLMQSGFRLATRAGISICVDDMLVPTKKEELIGEASK
KVKEYDRQYMSGLVTAQERYNNVVDIWGATGDAVGKAMMEQLSKEKTTDRDGNIVDQESF
NSIYMMADSGARGSSAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEALRDRI
LGRVAVADVVNPETQETVYESGTLLDEDAVEMIEALGVDEVRVRTPLTCDTRFGLCAACY
GRDLGRGSRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSNGTVR
FSATMRYVTNGRGEQIAISRSGEILITDDHGRERERHKVPYGATLLHLDGAQVKAGAQLG
TWDPLTRPIITEHGGYARFENVEEGVTVAKQIDDVTGLSTLVVIDPKRRGPASKNVRPQV
KLLDEHGVEVKIPGTDHAVTIGFQVGALITIKDGQQVPVGEVLARIPTEAQKTRDITGGL
PRVAELFEARAPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIPKEKQVLVH
DGQVVNKGEMIVDGPADPHDILRLQGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITDNGDTRFIIGEQVERSDMLYENDAMNAADKRPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHKARKARETSDRER
HDQIALEEAFAPMPSSVEEPTAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagttcagcaggtcgaacagttcgacgcgatc
aagatcggtctggcttcgccggacaagatccgctcgtggtcgttcggcgaagtgaagaag
ccggaaacgatcaactatcggacgttcaagcccgagcgtgacggcctgttctgcgcaaag
atcttcggtccgatcaaggattacgagtgcctttgcggcaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtggaagtcacgctggcgaaggtgcgtcgcgag
cgcatgggccacattgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctc
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacattgaacgcgtgctgtac
ttcgaagcgtatgtggttctcgaaccgggcatgacgccgctcaagcggtgccagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgctcgatcgacatcgaccagcaggtcgagcat
ctgcgcgccgagctgcaagccacgggctcggaagcgaagatcaagaagtacgccaagcgc
ctgaaggtgctcgaggctttccagcgttcgggcattaagcccgagtggatggtgctcgaa
gtgctgccggtgctcccgcccgagctgcgcccgttggtgccgctcgacggtggccgcttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgtctgctcgagctgaaggccccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatccgtggactcgctgctcgacaacggccgtcgcggcaaggcgatgaccggtgcgaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aatctgctcggtaagcgcgtggactactcgggccgttcggtgattaccgtgggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactcttcaagccgttc
atcttccacaagctggaagtgttgggcgtggccacgaccatcaaggccgcgaagaaggaa
gtcgagaaccagacggcggtggtgtgggacatcctcgaagatgtgatccgcgaacacccg
atcatgctgaaccgcgcaccgacgctgcaccgcctggggattcaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagcttcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgtaccctgatgctggcctcgaacaacgtgttgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtattacgcgacccgcgacaagatcaacggc
cgcggcgaaggcctgtcgttcatcgacgtctcggaagtgctgcgcgcgtacgacaacaag
gaagtcgaactggcttcgcgcgtgaacgtgcgtatcacggagtacacggtcgatccggaa
acgggcgagaagacgccgaagatcacgctgtacccgaccacggtcggccgcgcgatcctg
tcggaaattctgccgccgggcctgccgttctcggtgctgaacaagtcgctcaagaagaag
gaaatctcgaagctgatcaacacggcgttccgccgctgcggtctgcgcgagacggtgatc
ttcgtcgacaagctgatgcagtcgggcttccgcctggcaacgcgcgccggtatctcgatc
tgcgtcgacgacatgctcgtgccgacgaagaaggaagagctgatcggcgaagcgtcgaag
aaggtcaaggaatacgaccgtcagtacatgtcgggtctggtcacggcgcaagagcgttac
aacaacgtcgtggacatctggggtgcgaccggcgacgccgtgggcaaggcgatgatggag
cagctctcgaaagagaagacgaccgatcgcgacggcaatatcgtcgaccaggagtcgttc
aactcgatttacatgatggccgactccggtgctcgcggttcgagcgcccagattcgccag
ctcgcggggatgcgtggcctgatggccaagccggacggctcgattatcgagacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacccacggtgca
cgtaagggtctggccgatacggcactgaagacggcaaactcgggttacctgacgcgtcgt
ctggtcgacgtgacgcaggatctggtcgtggtcgaagacgattgcggcacgagcaacggc
gttgcgatgaaggcgctggtcgagggcggtgaagtggtcgaagccctgcgtgaccgtatc
ctcggtcgcgtggccgtggccgacgtcgtgaatccggaaacgcaagagacggtgtacgaa
tcgggcacgctgctcgacgaggacgccgtcgagatgatcgaagcgctgggtgtcgacgaa
gtgcgcgtgcgcacgccgctgacctgcgatacgcgcttcggtctgtgcgccgcctgttac
ggccgtgaccttggccgcggctcgcgtgtgaacgtgggcgaagcggtcggtgtgatcgct
gcgcagtcgatcggtgaaccgggcacgcagctcacgatgcgtacgttccacatcggtggt
gcggcatcgcgtgcggccgtggcctcgtcgatcgaagccaagtcgaacggtacggttcgc
ttctcggcgaccatgcgttacgtgacgaacggtcgcggcgaacagatcgccatctcgcgt
tcgggcgaaatcctgatcacggacgatcatggccgtgagcgcgagcgccacaaggtgccg
tacggcgccacgctgctgcatctggacggcgcacaggtcaaggccggtgcccaactgggt
acgtgggatccgctgacgcgcccgatcattaccgaacacggcggttacgcccggttcgag
aacgtcgaggaaggtgtcacggtggccaagcagatcgacgatgtgacgggtctgtccacg
ctggtcgtgatcgatccgaagcgtcgtggtccggcgtcgaagaacgtgcgtccgcaggtc
aagctgctcgacgaacatggtgtggaagtgaagatcccggggaccgatcacgcagtgacg
atcggcttccaggtgggcgcactgatcaccatcaaggacggtcagcaagtgccggtgggt
gaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgcgatattaccgggggtctg
ccgcgtgtggccgagctgttcgaagcgcgcgcaccgaaggacgccggcattctggccgaa
gtcaccggtaccacgtcgttcggcaaggacacgaagggcaagcagcgtctggtcattacc
gatctcgacggcaaccagcacgagttcctgattccgaaggaaaagcaggtgctggtgcac
gacggccaggtggtgaacaagggcgaaatgatcgtggacggtccggccgacccgcacgac
atcctgcgtctgcagggtatcgaagcgctggcgcgttacatcgtcgacgaagtgcaggac
gtgtaccgcttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttcatcatcggcgaacag
gtcgagcgctcggacatgctgtacgagaacgacgccatgaacgccgcggacaagcgtccg
gcgcagtacgagaacgtgctgctggggattacgaaggcgtcgctgtcgacggattcgttc
atctcggcagcctcgttccaggaaacgacgcgcgtgttgaccgaagccgcgatcatgggc
aagaaggacgacctgcgtggcctgaaggaaaacgtcatcgttggccgtctcatcccggca
ggtacgggtctggcgtatcacaaggcccgcaaggcccgcgagacgtcggatcgcgagcgt
cacgaccagatcgctctggaagaagcgtttgcaccgatgccaagctcggtggaagagcct
acggcggagtaa
DBGET
integrated database retrieval system
