Pandoraea sp. XJJ-1: OYT13_23545
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Entry
OYT13_23545 CDS
T10414
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
panx Pandoraea sp. XJJ-1
Pathway
panx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OYT13_23545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panx03019
]
OYT13_23545
Enzymes [BR:
panx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OYT13_23545
Messenger RNA biogenesis [BR:
panx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OYT13_23545
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
UvrD-helicase
CARD_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
WAL82686
LinkDB
All DBs
Position
complement(5083604..5085253)
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AA seq
549 aa
AA seq
DB search
MSFEKLGLSADILRAVADLGYTHPTPIQLQAIPAVLQGGDLLAGAQTGTGKTAGFTLPIL
QMLSTRARAAAANGKRSVRALVLTPTRELAAQVEESVTQYGKYLPLTSMTVFGGVSMVPQ
VKQLARGVDILVATPGRLLDHMQQKTVDLSGVEILVLDEADRMLDMGFIRDIRRVLAVLP
SKRQNLLFSATFSDEIKQLADGLLKSPALIEVARRNTTAETVAQKIHPVDRDRKRELLEH
LVREHNWFQVLVFTRTKHGANRLAEQLTKGGIPALAIHGNKSQGARTRALAEFKSGTLQV
LVATDIAARGIDIDQLPHVVNFDLPEVAEDYVHRIGRTGRAGANGEAVSLVCVDEHQLLT
QIERLIKRTIDREVIPGFDPDPHAVAQPIRKAQQGRGAGGGRGGRGGDDDDARQPARAPR
EAREPRDGGRGARQGNEPKARREGERGGRKNSSAVNGGNAGHGAQVANAGQGGQQRHQAQ
APKRQGDAQRAATPAAGAARQGRDGRTGQTASRGQGGGAERGDFAQRAPRPARRDAVGGA
LLMGKAKRD
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaaagctcggcctgtcggccgacatcctgcgtgccgtggccgaccttggc
tacacgcacccgacgcccattcaactgcaagcgattccggccgtcctgcaaggcggcgat
ctcctcgccggtgcccagaccgggaccggcaagacggcgggcttcacgctgcctatcctg
caaatgctctccacgcgtgcgcgcgcggcggcggccaacggcaagcgctccgtgcgcgcg
ctcgtgctgacgcccacgcgcgagttggccgcccaggtcgaggaaagcgttacgcaatac
ggcaagtacctgccgctcacgtccatgaccgtgttcggcggcgtgtcgatggtgccgcag
gtcaaacaattggcgcgcggcgtggacattctcgtcgcgacccctggccgtctgctcgat
cacatgcagcagaaaacggtcgatctttctggcgtcgagattctcgtgctggacgaagcc
gaccgcatgctcgacatgggcttcattcgcgatattcgtcgtgtgctggcggtgctgccg
tcgaagcgccagaacctgctgttctcggccacgttctccgacgagatcaagcaactggcc
gacggcctgctcaagtcgcccgcgctcatcgaagtggcgcgtcgcaacacgacggcggaa
accgtcgcgcagaagatccacccggtcgatcgcgaccgtaagcgcgagctgctcgaacac
ctcgtgcgcgagcacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcg
aaccggctcgccgagcagctcacgaagggcggcattccggcgctcgccattcacggtaac
aagagtcagggcgcccgcacgcgagcgctcgccgaattcaagagcggcacattgcaggtg
ctggttgcgaccgatattgccgcgcgcggcatcgacatcgaccagttgccccacgtggtc
aacttcgacctgccggaagtggcggaggactatgtccaccgcatcggccgcaccggacgc
gccggcgcaaacggcgaggccgtgtcgcttgtgtgcgtggacgagcatcaactgctcacg
cagatcgaacgtctcatcaagcgcacgatcgatcgcgaagtgatcccgggcttcgatccg
gatccgcatgccgtggcgcaaccgattcgcaaggcgcaacaaggccgtggggccggtggt
ggacggggcgggcgcggcggcgacgacgacgacgcgcgccaaccggcccgcgccccgcgt
gaagcgcgtgagccgcgcgatggcggtcgtggcgcacgccagggcaacgagccgaaggcg
cgtcgcgaaggcgagcgcggtggccgaaagaacagcagtgccgtgaacggcggaaatgcg
gggcacggcgcgcaggtcgcgaacgcgggacaaggcgggcagcaacgccatcaggcgcag
gcgcccaagcgtcagggcgatgcccaacgcgcggccacaccggcggccggtgcagcacgc
caaggtcgcgacggccgcacggggcagaccgcctcgcgcgggcaaggaggcggcgcggag
cgcggcgatttcgcacagcgcgcgccgcgtccggcgcgtcgcgacgcggttggcggcgcc
ttgctgatgggcaaggcaaaacgcgactga
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