Paenarthrobacter sp. NyZ202: ACPFL9_01740
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Entry
ACPFL9_01740 CDS
T11214
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pany Paenarthrobacter sp. NyZ202
Pathway
pany03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pany00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACPFL9_01740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pany03400
]
ACPFL9_01740
Enzymes [BR:
pany01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACPFL9_01740
DNA repair and recombination proteins [BR:
pany03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACPFL9_01740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Oxidored_nitro
Motif
Other DBs
NCBI-ProteinID:
XRQ34364
LinkDB
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Position
complement(355870..358431)
Genome browser
AA seq
853 aa
AA seq
DB search
MAVKQKERVVVEGHELTLTNLGKIIYPETGTTKAEVLAYYAAVAAFLIPAAANRPVTRKR
WVNGVGTAENPGQVFFQKNLEDSAPKWIPRATIHHSDHTNDYPMVNNLATLTWMAQIASL
EIHVPQWQVDPAGNPLRPDRFVLDLDPGPGAGLPECVEVAKLARSILQDMGMDPVPVTSG
SKGIHLYTGLEGTLKSEQVSAFAHELARALESDHPDLVVSDMKKSLRHGKVLVDWSQNSG
NKTTIVPYSLRGKAHPTVAAPRTWRELASPTLDHLDFTEVMKRVSTGKDHFAPISSRHLP
PHGEDEDDGGTSTGGSGASRRGTPGGRERVVTVEDRLSKYVGMRDPGKTPEPFPASSSNR
DGGQAPAARSSEQPKPGDPPPPGGIFVIQEHHARRYHLDLRLERDGVLASWALPRGVPET
PDRNNLAVHTEDHPMEYANFAGVIPKGEYGAGTMTIWDRGEYTCEKWREGKEVIATLTGQ
PGGGLQGTKRLALINTGDRWLIHLMKEQPGGRKKPAAKVAPETKPPPAVGPEPMPAYTPM
LATSGTVGELRGGGWLYELKWDGIRAIITGTGSSIRLTSRNGNDLTATYPELTDRKCWPP
GDFVADGEIVALGKGARPDFGRLQLRMNLVKAADIERVRGSVPVSLMLFDLLYDGGTDLS
RLPFRERRDHLAGFAGKLPGGCAIHLSEVLDHDVDDLMASAAELGLEGVMAKKADSPYVV
GRRSRAWLKLKLEQSQEVVVGGWRVGAGARSGTFGALLLGVPDGDKLRYVGRVGTGFKDW
QLRDIMDKLEPREIPESPFADIPREDSANARWVKPELVAEVAFGNWTGPGRLRHPVWRGW
RPDKSPSDVSQPN
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
gtggcagtcaagcagaaggagcgtgtcgtcgtcgagggccatgaactgaccctgacgaac
ctgggcaagatcatctacccggagacaggcaccaccaaggctgaagtccttgcctactac
gcagcggttgccgcgtttctcatcccggcggcagccaaccggcccgtgacgcgcaagcgg
tgggtcaacggggtaggcactgcagagaaccccgggcaggtcttcttccagaagaacctg
gaggactcggcgcccaagtggattccgcgcgccaccatccaccattcggaccacaccaat
gactatccgatggtcaacaacctcgccacgctcacctggatggcccagatcgcgtcgttg
gaaatccatgtgccgcagtggcaggtggatccggccggcaatccgctgcgcccggaccgt
tttgtgctggaccttgaccccggccccggcgcaggcctgcccgaatgcgtggaagtggcc
aaactcgcccggtccatcctgcaggacatgggcatggaccccgttccagtgaccagcggc
agcaagggtatccatctctacacggggctggaaggcacgctgaaatcagagcaggtgtcc
gcgttcgcccatgagctcgcccgcgcccttgagtccgatcatccggacctggtggtcagc
gacatgaagaagtccctccgccacggcaaggtcctggtggactggagccagaacagcggc
aacaagaccacgatcgtgccctactcgctccgcggcaaggcgcaccccacggtagctgca
ccacgcacgtggcgggaactggcctcccccacgctggaccaccttgacttcaccgaggtc
atgaagcgcgtcagcacggggaaggaccactttgcgccgatttcctcgcgtcatctcccg
ccgcacggggaagatgaggacgacggcggcacctccacgggcggcagcggcgcctcccgg
cggggtactccgggcggccgcgagcgggtagtgaccgttgaggaccgtctttccaaatat
gtgggaatgcgcgacccggggaagactcctgaaccttttccggcgtcgtcctccaaccgc
gatggcgggcaggcacctgccgcacgttcatcagagcagccgaaacccggcgacccgccg
cctcccggaggcatcttcgtcatccaggaacatcacgcccgccgctaccacctggacctg
cggctggagcgcgacggcgtcctggcctcgtgggcactgccgcgcggcgtgccggaaacg
ccggaccggaacaacctggccgtccataccgaagaccatcccatggaatacgcaaacttc
gcgggcgtcatccccaagggcgaatatggggccgggaccatgaccatttgggaccggggc
gagtacacctgcgagaaatggcgtgaggggaaggaagtgatcgccacccttacgggccag
cccggtggcggtctgcagggcaccaagcgcctggccctcatcaataccggcgaccgctgg
ctcatccacctgatgaaggaacaacccggcggccggaagaagcccgccgcgaaggtggct
ccggaaacgaagccgccacccgccgtcgggcctgaacccatgccggcctacacccctatg
ctggcaacctccggaaccgtgggggaactccgcggcggcggctggctgtatgaactgaag
tgggacgggatccgggcgatcatcacgggcaccgggagcagcatccgcctgacgagccgc
aacggaaacgacctcaccgcgacctacccggagctcacggaccggaaatgctggccgccg
ggcgacttcgtggcggacggggagatcgtggcgctcggcaagggagcccgcccggacttt
ggccggctgcagttgcggatgaacctggtcaaggctgcggacattgaaagggtccgcggg
tcagtcccggtgagcctgatgttgttcgacctgttgtacgacggcggcaccgacctcagc
cgcctgccgttccgcgaacgtcgggaccatctggcgggcttcgccgggaagctgccaggt
ggctgcgcaatccacctctccgaggtcctggaccatgacgtggacgacctcatggcgagc
gccgccgaactgggcctggaaggggtgatggccaagaaggcggacagcccgtacgtggtc
ggacgccggagccgggcgtggttgaagctcaagctcgaacagagccaggaagtggtggtt
ggcggctggcgtgttggtgccggcgcccgcagcggcacgttcggtgccttgctgctgggc
gtgcccgacggcgacaaactgcgctacgtgggccgggtaggaaccgggttcaaggactgg
cagctgcgggacatcatggacaagctcgagccgcgggagatcccggaatcaccgtttgcg
gacatcccgcgggaggactcggccaatgcccgctgggtgaagcccgagcttgtggcggaa
gtggctttcggcaactggacgggtcccggccggcttcggcaccccgtgtggcggggttgg
cgcccggacaagtcgccttccgacgtcagccagcccaactaa
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