Pantoea sp. SOD02: NR302_12050
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Entry
NR302_12050 CDS
T10895
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
panz Pantoea sp. SOD02
Pathway
panz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
panz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
NR302_12050 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
panz03400
]
NR302_12050 (sbcB)
Enzymes [BR:
panz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
NR302_12050 (sbcB)
DNA repair and recombination proteins [BR:
panz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
NR302_12050 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NR302_12050 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NR302_12050 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DUF2859
Motif
Other DBs
NCBI-ProteinID:
UVC28000
LinkDB
All DBs
Position
2578650..2580071
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AA seq
473 aa
AA seq
DB search
MPASEFTFLFHDYETFGKSPSLDRPAQFAGLRTDKEFNAVGEPQVFYCQPADDYLPQPEA
VMITGITPQTAKARGVTEAAFAERIHGLFSEPQTCVIGYNNVRFDDEVTRNIFYRNFFDP
YGWSWQNGNSRWDLLDVMRACYALRPEGIEWPENDDGFPSFKLEHLTRANGVAHEQAHDA
MSDVYATLAMAKLVKEKQPKLFEFLFTHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNT
SWIVPLAWHPDNRNALIVADLAGDMSPLLKLGSDELRERLYTRHSDLGDLPAVPIKLVHI
NKCPVLAPASTLRPENAARLNIDRQQCLANLKLLRDHAEVREKVVALFADAEPFTPSDDV
DAQLYDGFFSDADRAGMNIIRQTPPQNLPALDLTFEDKRIAKLLFRYRARNFPGTLDDTE
QQRWLQHRREALNAERVQAFLLELESLASLHEDNTEKMAQLKALYLYAQELVS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgcctctgagttcaccttcttatttcacgattatgaaaccttcggtaaaagcccg
tcgctggaccgtccggcgcagttcgcgggcctgcgtaccgataaagaattcaatgcggta
ggtgaaccgcaggtgttttattgccagccagccgacgattatctgccgcagccggaagcg
gtgatgatcaccggcattacgccgcaaaccgccaaagcgcgtggcgtgacagaagcggcg
tttgccgaacgcattcacggcctgtttagcgagccgcaaacctgtgtgattggttacaac
aatgtgcgttttgatgatgaagtgacgcgcaatatcttctatcgcaacttcttcgatccg
tacggctggagctggcaaaacggcaattcacgctgggatttgctcgatgtgatgcgcgcc
tgctacgcgttgcgcccggaaggcattgagtggccggaaaatgacgatggcttcccaagc
ttcaagctggagcatctcaccagggccaatggcgtggcgcacgaacaagcgcacgatgcg
atgtcggacgtttatgccacgctggcgatggcgaaactggttaaagagaagcagccgaag
ctgtttgagtttctgtttacccatcgcaacaaacagaaactgatgacattgattgatatc
ccgcagatgaaaccgctggtgcacgtctccggcatgttcggcgcggcgcgcggtaacacc
agctggattgtgccgctggcgtggcatccggataatcgtaacgcgctgattgtcgctgat
ttggccggtgatatgtcgccgctgctaaagctaggatcagatgaactgcgtgagcgtttg
tatacccgtcacagcgatttgggcgatctgcctgcggtgccgatcaagctggtgcacatc
aataagtgtccggtgctggcgcccgcgagcacgctgcgtccggaaaatgccgcgcgcctg
aatatcgatcgtcagcagtgtctcgctaacctcaagctgctgcgtgaccacgcggaggtg
cgcgagaaagtggtggcgctgtttgccgacgccgagccgtttacgccttcggatgatgtg
gatgcgcagttgtatgacggtttcttcagcgacgccgatcgcgcgggtatgaatattatc
cgccagacgccaccgcagaacttaccggcgctggatttgacctttgaggataagcgcatt
gctaagctattgttccgctaccgggcgcgtaacttccccggcacgctggatgacaccgag
cagcagcgctggttgcagcatcgccgcgaagcgctgaatgctgagcgtgtgcaggcgttt
ctgctggagctagagtcgctggcgagtttgcatgaagacaatactgagaagatggcacag
ctgaaggcgctgtatttgtatgcgcaggagttggtgtcttag
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