Pantoea sp. At-9b: Pat9b_0141
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Entry
Pat9b_0141 CDS
T01386
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pao
Pantoea sp. At-9b
Pathway
pao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pat9b_0141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pao03021
]
Pat9b_0141
03019 Messenger RNA biogenesis [BR:
pao03019
]
Pat9b_0141
Transcription machinery [BR:
pao03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pat9b_0141
Messenger RNA biogenesis [BR:
pao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pat9b_0141
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ADU67468
LinkDB
All DBs
Position
166742..168001
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTSSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaacctggcgcgtatgcgcaagcaggatattattttcgccattctgaag
cagcacgcgaagagtggcgaagacatcttcggtgatggtgtgctggagatactgcaggat
ggatttggtttcctccgctccgcagacagctcctacctcgccggtcccgacgacatctac
gtttctcccagccaaattcgccgcttcaaccttcgcacaggtgacaccatctccggcaaa
atccgcccgccgaaagaaggtgagcgttactttgccctgctgaaggtcaatgaagttaac
tacgacaagccggaaaacgcccgtagtaagattctgttcgaaaacctcacgccgctgcac
gccaacagccgtttgcgtatggaacggggtaatggttctactgaagacctgacggctcgc
gtactggacctggcgtctccgattggtcgtggtcagcgtggcttgatcgtggcaccgccg
aaagccggtaaaaccatgctgttgcagaacatcgcgcagagcatcgcctacaatcacccg
gattgcgtgctgatggtgctgctgattgacgaacgtccggaagaagtgaccgagatgcag
cgcctggtgaaaggcgaagtgattgcatcaaccttcgacgaaccggcttcccgtcacgta
caggttgcggaaatggtgatcgagaaggccaagcgcctggttgagcacaaaaaagacgtg
atcatcctgctcgactccatcactcgtctggcgcgtgcctacaacaccgttgttccggct
tccggtaaagtgttgaccggtggtgtggatgccaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcgcgtaacgtagaagagggtggtagcctgacgatcatcgcgacggcgctg
gttgataccggttcgaagatggacgaagtcatctacgaagaatttaaaggtacgggcaac
atggaattgcacctttcccgtaaaattgcggaaaaacgtgtgttcccggcgattgactac
aaccgctccggtacgcgtaaagaagagctgcttacctcttctgaagagctgcagaagatg
tggatcctgcgcaaaatcatccatccgatgggtgaaattgacgcgatggagttcctcatc
aacaaactggcgatgaccaaaaccaacgacgaattcttcgatatgatgaagcgttcctga
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