Pantoea sp. At-9b: Pat9b_0898
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Entry
Pat9b_0898 CDS
T01386
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pao
Pantoea sp. At-9b
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pao03400
]
Pat9b_0898
DNA repair and recombination proteins [BR:
pao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pat9b_0898
Archaeal homologous recombinant proteins
Pat9b_0898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
AAA_21
ABC_tran
cobW
MobB
AAA_22
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ADU68222
UniProt:
E6W7W0
LinkDB
All DBs
Position
complement(1026204..1029743)
Genome browser
AA seq
1179 aa
AA seq
DB search
MKILTLRFKNLNALRGEWFIDFRREPFASNGLFAITGATGAGKTTLLDAICLALYHQTPR
LGVLSQSQNELITRDTAECLAEVEFEIKGEAWRAFWSQNRARGQADGKLQAPRVELARCA
DNQIVADKVGDKLKLIETLSGLDFARFTRSMMLSQGQFAAFLNAKPGERAELLEELTGTE
IYGQISMQIFERYKNARAELDTLRARAGGMSLLDEAHRTALTSQLEQLNAAETTLNQQLT
TAQQQQQWLSQSHQLAEEQQQAQQALQAAENAWQQADPERQRLARAEPAEKLRAKLQQRT
QLQQENIALTQQYQQVQAQQQQAIAAQQQGETRYQAAQQAREQAQHAQQQLETLLTEQVI
PLDQQLTALQHQLSDQQREVTAQQQVVQQSRTALNQQQQESERLQQLWDEQQQWRSREAS
VASWGEHLTRWQSDITRLDEREQTVAQLRHQQQQQQQQLDQLQHALTARQQAAQPLAEQE
TRDISQVREALAQHQAQRASRQQLTLLAAQWHALQPQQQQRQQKLHALTQQYQAEEQVLQ
ALREEWKRENQAMLDVQTICDQERTIAQLADERARLQPNHPCPLCGSCQHPAIEQYRQLE
PGENQQRLAALQTRVAQLKESGTAKGEQQRLSLLQQQALQQELKDIGQQLTTLTEQWQQL
TGELALTFAVEQQDDVIRWQQQQDQQENQLQAWLEHLQQQQLAQQQISSVQQALDDLRQR
SETEYAAWQQLSQQLAQQLAQHQLTLPAREARESWLNTLQLRWQKWQESERLLTNLQPQL
AKADSERHNQQQNLAREQQRLDALQQTLSALQLQNAEQHQRRQQLFGDRQVQAERQAHQA
ALQAGEQELAQQLQAWQQAQSAVHSLSGQRAQLEQQQLTQAARLEAAETDLRSALQHSDF
ADEAALRAALLDVAEVDQLRQRLQALEQQRQQQTALSQQLVQRLSAHQQQRPAALSDELA
ADIGTRLENLRMALRDNARQQGEAQQQLSSDARLREQQQSLLTQISSHEAELTQWSQLNE
LIGSAKGDKFRRFAQGLTLDHLVWLANRQLDRLHGRYLLQRRATDELELDVVDTWQADAT
RDTRTLSGGESFLVSLALALALSDLVSHKTRLESLFLDEGFGTLDAETLDTALDALDALN
ASGKTIGVISHVEAMKERIPVQIKVRKMNGLGYSKLELP
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctgacgctgcgctttaaaaacctcaacgccctgcgtggggaatggtttatc
gatttccgccgcgaaccctttgccagtaacggcctgtttgccatcaccggcgcaaccggt
gccggaaaaaccaccctgctcgatgctatttgcctggcgctgtatcaccagacgccacgc
cttggcgtgctgtcgcaatcccagaacgaactgatcacccgcgataccgccgaatgtctg
gcggaagtggagtttgagatcaaaggcgaggcatggcgcgccttctggagccagaaccgc
gcccgtggtcaggccgatggaaaattacaggcaccgcgcgtcgagctggcgcgctgtgcc
gataaccaaatcgtcgccgataaagtgggcgacaaactgaagttgatcgaaaccttatcc
ggtctcgatttcgcccgctttacgcgttcgatgatgctgtcacaggggcaatttgctgcc
tttctgaatgccaaaccgggcgagcgcgccgaattgctggaagaactgaccggcaccgaa
atttacggccaaatctcgatgcagatttttgagcgctacaaaaacgctcgcgccgaactc
gatacgctacgcgcccgcgccgggggcatgtcgctgctggatgaggcgcatcggacagca
ctgaccagccaactggagcaactcaatgctgccgaaaccacgctgaatcagcagctgact
accgcccaacagcagcagcagtggctgagtcagtcacatcaactggctgaggagcaacaa
caagcacaacaggcattgcaggcggcggaaaacgcctggcaacaagccgaccccgagcgc
caacggctggcccgcgccgaacccgcagaaaaattgcgcgctaaactgcaacagcgcacc
cagttgcaacaggaaaacatcgccctgacgcagcagtaccaacaggtgcaggcgcaacag
cagcaggcgatcgccgcgcaacaacagggcgaaacccgttatcaggcagcgcaacaggcg
cgtgaacaggcacagcacgcacagcagcaactggaaacgctgctgacggagcaggtcatc
ccactcgatcagcaactcactgccctgcaacaccagctcagcgatcagcagcgcgaggta
accgcccaacagcaggtggtgcagcaaagccgtactgcgctcaatcagcaacaacaggag
agtgaacgcttacaacagctgtgggatgagcagcagcaatggcgcagccgtgaggccagc
gtcgccagttggggtgagcacctgacacgctggcagtccgacattacccggctggatgag
cgtgagcaaaccgttgcccagttgcgccaccagcaacagcagcaacaacagcagcttgac
cagctccagcacgccctcaccgcccgtcagcaggcagcgcagccgctggcagagcaggag
acgcgggatatcagtcaggtgcgggaggcgttggcacaacatcaggcacagcgtgcatcg
cgccaacagctgaccctgttggccgcgcagtggcacgcactccaaccacagcagcagcaa
cgccagcagaaactgcatgcgttaactcagcagtatcaggcggaagaacaggttttacag
gcgctgcgcgaggagtggaagcgcgagaatcaggcgatgcttgatgtgcagaccatctgt
gaccaggagcgtactatcgctcaactggccgatgaacgcgcccgcttgcagcccaatcac
ccttgcccgttgtgtggttcctgtcagcatccggccattgagcaatatcgccaactggaa
cctggcgagaatcaacagcgtcttgcggcactgcaaacccgtgttgctcagctcaaagaa
tccggcacggctaaaggtgaacagcagcgcctgtcattgctgcaacagcaggcgttgcag
caggagctcaaggatatcgggcaacaactcactacgctgactgagcaatggcaacagttg
accggtgagctggcgctcaccttcgcagtggagcagcaggacgatgttatccgctggcaa
caacagcaggatcagcaggagaaccagctacaagcatggctggagcatctgcaacagcag
caactggcgcagcagcagattagcagcgtacagcaggcgttggacgatctccgccagcgc
agtgaaacggaatacgcggcgtggcagcaattaagtcagcagttggcacagcaactggca
caacatcagcttaccctgcccgcccgtgaggcgcgtgaaagctggctaaacacgctacaa
ctgcgctggcagaaatggcaagagagtgagcggttactcaccaacctgcaaccgcagctg
gcgaaagccgacagcgaacgccataaccagcagcagaatcttgcgcgtgaacagcaacgg
ctggatgcactgcaacaaacgctcagcgcgctacagctgcaaaacgccgaacaacaccag
cgtcgccagcaactgttcggcgatcgccaggtgcaggccgagcgccaggcgcatcaggcc
gcgctacaggcaggtgaacaggaactggcgcagcaattacaggcctggcagcaggcacaa
agcgccgtgcacagcctgagcggccagcgcgcgcaactcgaacagcagcaactgacgcaa
gccgcccgtctggaggcggcggaaaccgacctgcgcagcgccttgcagcacagtgatttt
gccgacgaggctgcacttcgcgccgcgctgctggatgtggcagaggttgatcagctgcgt
caacgtttacaggcgctggaacagcagcgacaacaacaaaccgcgctgagccagcaactg
gtgcaacgattgagcgcccatcagcaacagcgtccggcagcactgagcgacgaactggcg
gcagacatcggcacccgactggaaaacctgcgcatggcgctgcgcgacaatgcgcgccag
caaggtgaagcacagcagcagttgtccagcgatgccagattgcgtgagcagcagcaatcg
ctgttgacgcaaatcagcagccatgaagcggaactgacgcaatggagccagctcaacgag
ttaatcggctcagctaaaggcgataaattccgccgtttcgcccaggggttaacccttgat
cacctggtatggctggctaaccgtcagctcgatcgcctgcatggccgttatctgttgcag
cgtcgtgccacggatgaactggaactggatgtggtggatacctggcaggccgatgccacc
cgcgacacccgcacgctatccggcggcgagagttttctggtcagcctggcattggcgctg
gcgttatccgaccttgtcagccacaaaacccgcctcgaatcgctgttccttgatgaaggc
tttggcacgctggatgccgagacactcgacaccgcgctggatgcgctcgatgcattgaat
gccagcggcaaaaccattggcgtgattagccatgtggaagcgatgaaggaacgtatcccg
gtgcagattaaggtgcgtaagatgaacggtttgggctacagcaagctggagttgccatag
DBGET
integrated database retrieval system
