Pantoea sp. At-9b: Pat9b_1131
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Entry
Pat9b_1131 CDS
T01386
Name
(GenBank) transcriptional regulator, AraC family
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pao
Pantoea sp. At-9b
Pathway
pao03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Pat9b_1131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pao03000
]
Pat9b_1131
03400 DNA repair and recombination proteins [BR:
pao03400
]
Pat9b_1131
Enzymes [BR:
pao01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Pat9b_1131
Transcription factors [BR:
pao03000
]
Prokaryotic type
Helix-turn-helix
AraC family
Pat9b_1131
DNA repair and recombination proteins [BR:
pao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Pat9b_1131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_28
HTH_23
GntR
HTH_Tnp_1
CENP-B_N
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
ADU68453
LinkDB
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Position
complement(1275609..1277096)
Genome browser
AA seq
495 aa
AA seq
DB search
MFDPDIAYQALTSRDSRFDGLFFVGVTSTGIYCRPICPVKAPMQKNCLFFSSAEAAEKAH
FRPCLRCRPELAPGFAPVDSHHRIADRLIRRIEEGLLEEQETLAEIATEFGLSERQLRRV
VQQELGVSPIELRQTRRMLLAKQLLTETSLPVTEIAYASGFNSLRRFNDVFQARYRMTPS
RLRKQSSPSPVTPLQESAELRLSYRPPYDWEAILDFLQQRVMKEVEWVAEGIYHRTVALG
GCQGWVRVSHYPEKQALKVQFTTSLTPVLPALLRRLRDLFDLDAQPQRIADQLAQDPLLA
PSLVRYPGLRVPGAFDGFELGVRAILGQQVTVKAATTLSSRVAQRFGAPMATPWPELSRL
SPSAETLATATQDDIASLGIVSARSQAILALAQACASGALRFNGAVNPDVVQQQLLALKG
IGPWTASYIAMRALRWPDAFPKEDIAIRNNLGGVSAKDAEVRSQVWRPWRSYAVLHIWKS
LTPEKGDEAKRNKAP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatcccgatattgcttaccaggcgctgacatcgcgcgatagccgctttgacggc
ttgttctttgtcggtgtgacatcaaccggcatctattgccgaccgatctgcccggtaaaa
gccccgatgcagaaaaattgcctgtttttttccagcgctgaagcggcagagaaagcccat
ttccgcccctgtctgcgttgtcgcccggaactggcacccggtttcgccccggttgatagc
catcatcgtattgccgatcggctgatccggcgtattgaggaaggactgctggaagaacag
gaaacgctggcggaaattgcgaccgagtttggtttaagtgagcgccaactgcgccgcgtg
gtgcagcaggagctgggcgtctcaccgatcgaattacgtcaaacccggcgcatgttgctg
gcgaaacaactgctaaccgaaacctccctgccagtaacggaaatcgcttatgccagcggt
tttaacagcctgcggcgatttaacgatgtgttccaggcacgctaccgcatgacgccatct
cgtctgcgtaagcagtcttctccttcaccggtaacaccgttacaggaaagcgcagaactg
cgcctgagttatcgcccgccttatgactgggaagcgatactcgattttctgcaacaacgc
gtgatgaaggaggtggaatgggtcgcagaggggatttatcaccgtaccgtggcgctcggc
ggctgtcagggctgggtacgtgtcagtcactatcctgagaagcaggcattaaaggtgcag
ttcaccaccagcctgacaccggtgttgcctgccctgctgcgtcgcctgcgcgatttgttc
gatttggatgcccagccacaacggattgccgaccagttagcacaagatccgttactggca
ccgagtctggtcaggtatcccggcctgcgtgtcccaggagcctttgatggctttgaattg
ggcgtgcgggcgattctcggccaacaggtgacggtaaaagcggcgacgacgctgagtagc
cgtgtggcgcagcgtttcggcgcgccgatggcgacgccctggcctgagctgtcgcgcctt
tcgcccagtgcagaaacgctggcaacagccacccaggatgatatcgccagtctcgggatt
gtcagtgcccgctcacaggcgatcctcgcactggctcaggcctgtgcctctggtgcatta
cgctttaatggcgcggtcaatcctgatgtggtgcagcagcaattgctggcgttaaaaggg
ataggtccgtggaccgccagctatattgcgatgcgcgcgctgcgctggccggatgcattt
cccaaagaagatatcgcgattcgtaataatcttggcggtgtgagtgcgaaagacgccgag
gtacggtcacaggtgtggcgtccatggcgcagttatgcggtgctgcatatctggaagagt
ttgacgccggagaaaggtgacgaagcaaagcgtaacaaggcgccctga
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