Pantoea sp. At-9b: Pat9b_1179
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Entry
Pat9b_1179 CDS
T01386
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pao
Pantoea sp. At-9b
Pathway
pao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pat9b_1179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pao03019
]
Pat9b_1179
Enzymes [BR:
pao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pat9b_1179
Messenger RNA biogenesis [BR:
pao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pat9b_1179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ADU68501
UniProt:
E6W9K4
LinkDB
All DBs
Position
1323517..1324872
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AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYREPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL
QRLSAKDAPARGRRPVRALILTPTRELAAQVGENVREYSQYLNLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKSLAEKLLNNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERLLKREIPRIALPGFDPDPSIKAEPIQNGRQQQQQRGGRGRGPAAGGNPRPQSEGRAPR
PQGENRAPRRQGQDGKPARSRRPAANKSGNH
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgactctctcggcttaaatgccgatattttgcgtgcggtagcagaacagggc
tatcgtgaaccgacgccaatccagcgtcaggctattcccgtggtgctggctggtcgtgac
ctgctggcgagcgcccagaccggcaccggcaaaaccgccgggtttacgctgccattgttg
cagcgtctgtcggcaaaagatgcaccggcacgcggacgtcgcccggtgcgtgcgttgatc
cttacgccaacccgtgaactggccgctcaggtcggtgaaaacgtgcgtgaatacagccag
tacctcaacctgcgttcgctggtggtgtttggcggcgtcagcattaacccgcaaatgatg
aaactgcgcggtggcgtggacgtgctggtggcgacaccgggccgtctgctcgatctggcg
catcaaaacgcggtcgatctgtcacacgtggaaatcctcgtgctggatgaagccgaccgt
atgctggacatgggctttatccacgatatccgccgtgtgctggcgaaactgcctgccaaa
cgtcagaacctgctgttctccgcgaccttctccgacgagatcaagtcgctggcggaaaag
ctgctgaataacccggagcaggtggaagtggcgcgccgcaacaccgcctctgagcaggtt
tctcagcaggtgcattttgttgataaaaaacgtaaacgtgagctgctgtcgctgatgatt
ggtcgcgacaactggcagcaggtgctggtctttacccgtaccaaacacggtgctaaccat
ttggctgaacagctgaataaagacggcatcaccgcggcggcgatccacggcaacaagagc
cagggcgcgcgtacccgtgcattggccgatttcaaatccggtggcattcgtgtgctggtg
gcgaccgacatcgccgcgcgtggtctcgacatcgaagaactgccacacgtcgtgaactat
gaactgccgaacgtggcagaagattatgtgcaccgtattggccgtaccggtcgtgctgcc
gctaccggtgccgccctgtcgctggtatgcgtggacgaacacaaactgctgcgtgatatc
gaacgtctgctgaaacgtgaaatcccacgcattgcgctgccaggattcgatccggacccg
agcatcaaagctgagccgatccagaatggccgccagcagcaacagcagcgtggtggtcgt
ggtcgtggcccggcagcgggcggtaatccgcgtccgcagagtgaaggccgtgcgccacgt
ccgcagggtgaaaaccgtgcgccgcgccgtcagggtcaggatggcaaaccggcgcgttca
cgtcgtccggcagcgaacaaaagcggtaaccactaa
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