Pantoea sp. At-9b: Pat9b_2060
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Entry
Pat9b_2060 CDS
T01386
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pao
Pantoea sp. At-9b
Brite
KEGG Orthology (KO) [BR:
pao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pao03016
]
Pat9b_2060
Enzymes [BR:
pao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pat9b_2060
Transfer RNA biogenesis [BR:
pao03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pat9b_2060
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
ADU69374
UniProt:
E6WDR8
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All DBs
Position
2276148..2278082
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKEKLHAQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
VAVIHTDKDRESAEPESLVEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIQCRAARDVTH
DFQAGDWAVAEMRRHPLKGDRGFYAELTEFITTADDHLAPWWVTLSRHNLEREAPEVGFG
EMLDEHLTREDLTALDFVTIDSASTEDMDDALYAEETAEGNLLLTIAIADPTAYVPEGSA
LDKLAAKRAFTNYLPGFNIPMLPRELSDDVCSLRPNVRRPALACRVTVLKDGSLADDIHF
FAAWIESKAKLVYDEVSDWLENSGSWQPGSEAIAQQIRLLHRLCLARSDWRQTHALVFKD
RPDYRFVLGEKGEVLDIIAEPRRIANRIVEEAMILANVCAANVLQQKLGFGIYNVHTGFD
LANAEQAAGVLAGHGITVDAQAITTLDGFRQLRRELDAQPTQYLDSRIRRFQAFAEISTE
PGPHFGLGLEAYATWTSPIRKFGDMINHRLLKAIIRGEAIKRPQDELTVTMGERRRLNRM
AERDVGDWLYARFLAPFAGGDRKFSAEIIDVSRGGMRVRLLENGAVAFIPAPFIHAVRDE
LVCSQESGTVQIKGEVAYRVTDVIDVTIAEVRMETRSVVARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgctcgcgcagctgaaagagaagctccacgcgcagacgccg
cgcgccgaaggcgtggtgaaaggcacggaaaaaggttttggctttctggaggttgatgct
cagaaaagctacttcattccaccgccgcaaatgaagaaagtgatgcacggcgaccgtatc
gttgcggtgatccacaccgataaagatcgcgaaagtgccgagccggaaagcctggttgag
ccgttcctgacgcgttttgtcggccgcgtgcagaagaaagatgatcgcctgtctatcgtg
ccggatcatccactgctgaaagatgccatccagtgccgtgccgcccgtgatgtcacccac
gatttccaggccggtgactgggccgtggcggaaatgcgccgccacccgctgaaaggcgat
cgcggtttttatgccgaactgaccgaatttatcaccactgcggatgaccatctggcaccg
tggtgggtgacgctgtcgcgtcacaacctggaacgcgaagcgccggaagtcggttttggc
gagatgctggatgaacatctgacgcgtgaagacctgaccgcgctcgatttcgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgttgtacgcggaagagactgccgaaggc
aacctgctgctgaccatcgccattgccgatcctaccgcttatgtgccagaaggcagcgcg
ctggacaaactggccgccaaacgcgccttcaccaactacctgcccggctttaacattccc
atgctgccgcgtgaactgtctgatgacgtttgctcattgcgcccgaatgtccgccgtccg
gcactggcgtgccgtgtcaccgtgctgaaagacggtagcctggccgacgatatccacttc
ttcgcggcgtggatcgagtctaaagccaagctggtgtatgacgaggtgtcagactggctg
gaaaacagcggcagctggcagcccggcagtgaggcgattgcccagcagatccgtctgctg
catcgtctgtgcctggcgcgcagtgactggcgtcagacccatgcgctggtgttcaaagat
cgcccggactaccgtttcgtgctgggtgaaaaaggcgaagtgctggatatcatcgctgag
ccacgccgcattgctaaccgtatcgttgaagaagcgatgatcctcgccaacgtctgtgcc
gctaacgtgctgcaacagaagttgggcttcggtatctacaacgtgcacaccggtttcgac
ctcgccaacgccgaacaggcagcaggcgtgctggctggtcacggtattaccgttgatgcg
caggccatcaccacgctggacggcttccgtcagctgcgtcgtgaactggatgcccagccg
acccagtacctcgacagccgtattcgtcgcttccaggcctttgccgaaatcagcactgag
ccaggcccacacttcggccttggtcttgaggcttacgcaacctggacgtcgccgattcgt
aagtttggtgacatgatcaaccaccgtctgctgaaagccatcattcgcggtgaagcgatc
aagcgcccgcaggatgagctgacggtgaccatgggtgaacgtcgtcgtctgaaccgtatg
gccgagcgtgatgtgggcgactggctgtacgcacgtttcctcgccccgtttgccggtggc
gatcgcaagttcagcgccgagatcatcgacgtctcgcgcggtggtatgcgtgtgcgcctg
ctggagaatggcgcggtggcctttatccctgccccgttcatccacgcggtgcgtgatgag
ctggtgtgctcgcaggaaagcggcaccgtgcagatcaaaggcgaagtcgcttatcgcgtc
accgatgtgattgatgtgaccatcgccgaagtgcgcatggaaacccgcagcgtcgtcgcg
cgccctgccgcctga
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